MedChaabane / deepRAM
End-to-end deep learning toolkit for predicting protein binding sites and motifs.
☆45Updated 5 years ago
Alternatives and similar repositories for deepRAM:
Users that are interested in deepRAM are comparing it to the libraries listed below
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆44Updated 5 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆64Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆37Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Python package and command line tool for epitope prediction☆51Updated 5 months ago
- Draw RNA secondary structures in python.☆46Updated 4 months ago
- Evolutionary velocity with protein language models☆84Updated last year
- ☆44Updated last month
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 4 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆16Updated 2 years ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 7 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆43Updated 5 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆62Updated 7 years ago
- Singularity recipe for AlphaFold☆34Updated 2 months ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 5 months ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆29Updated 8 months ago
- PSIPRED Protein Secondary Structure Predictor☆53Updated 2 months ago
- Python Implementation of Codon Adaption Index☆35Updated last year
- ☆70Updated last year
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- ☆38Updated 3 years ago
- Python package to plot sequence logos☆29Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆66Updated this week
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago