End-to-end deep learning toolkit for predicting protein binding sites and motifs.
☆45Feb 26, 2019Updated 7 years ago
Alternatives and similar repositories for deepRAM
Users that are interested in deepRAM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Aug 7, 2020Updated 6 years ago
- End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning☆26Jan 23, 2020Updated 6 years ago
- ☆22Jun 10, 2024Updated 2 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆34Jan 7, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 4 years ago
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated last year
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- Scoring alignments by embedding vector similarity☆15Jul 17, 2026Updated 3 months ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 5 years ago
- ☆20Feb 25, 2025Updated last year
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 4 years ago
- ☆14Jun 14, 2019Updated 7 years ago
- some code for linlog model simulation☆10Sep 16, 2021Updated 5 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- Accelerate common Petri dish assays with AI.☆14Oct 28, 2025Updated last year
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆97Aug 14, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 5 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆27Nov 16, 2016Updated 9 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆40Feb 22, 2023Updated 3 years ago
- ☆11Mar 27, 2026Updated 7 months ago
- Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.☆16Aug 13, 2019Updated 7 years ago
- ☆41Apr 24, 2018Updated 8 years ago
- A viral haplotype reconstruction tool for long reads.☆18Jun 3, 2026Updated 4 months ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆47Apr 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Nov 14, 2024Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- microbes-dbs utilities to fetch microbe relevant databases☆10Jul 24, 2022Updated 4 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 10 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year