MedChaabane / deepRAM
End-to-end deep learning toolkit for predicting protein binding sites and motifs.
☆45Updated 6 years ago
Alternatives and similar repositories for deepRAM:
Users that are interested in deepRAM are comparing it to the libraries listed below
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 8 months ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Python package and command line tool for epitope prediction☆51Updated 8 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- The Complete Python Antibody Library☆22Updated 8 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- ☆46Updated 4 months ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆20Updated 6 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- Draw RNA secondary structures in python.☆48Updated 7 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆29Updated 11 months ago
- ☆51Updated 4 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆70Updated last year
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- HLA-I ligand predictor☆37Updated 4 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 7 months ago
- Diverse Genomic Embedding Benchmark☆45Updated last month
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology☆14Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆17Updated 9 months ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago