Alternatives and similar repositories for biovec:

Users that are interested in biovec are comparing it to the libraries listed below

• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• ehsanasgari / Deep-Proteomics
  ☆51Updated 4 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated last year
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 3 years ago
• samsinai / VAE_protein_function
  Protein function prediction using a variational autoencoder
  ☆93Updated 7 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆84Updated last year
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆58Updated 2 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆56Updated 3 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆104Updated 6 months ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆214Updated 3 years ago
• mircare / Porter5
  Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes
  ☆45Updated 4 years ago
• BenevolentAI / DeeplyTough
  DeeplyTough: Learning Structural Comparison of Protein Binding Sites
  ☆160Updated last year
• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆44Updated 5 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆59Updated last year
• alexarnimueller / LSTM_peptides
  Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
  ☆71Updated last year
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆99Updated 3 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆108Updated 3 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆69Updated 7 months ago
• Shen-Lab / DeepAffinity
  Protein-compound affinity prediction through unified RNN-CNN
  ☆140Updated 8 months ago
• sokrypton / GREMLIN_CPP
  GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!
  ☆53Updated 2 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated 10 months ago
• j3xugit / RaptorX-Contact
  Deep residual neural network for protein contact/distance prediction developed by Xu group
  ☆78Updated 4 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆57Updated this week
• av1659 / fbgan
  ☆55Updated 5 years ago
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆34Updated 3 years ago