kyu999 / biovecLinks
A new approach for representing biological sequences
☆99Updated 10 months ago
Alternatives and similar repositories for biovec
Users that are interested in biovec are comparing it to the libraries listed below
Sorting:
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- ☆127Updated 4 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- ☆52Updated 4 years ago
- Protein function prediction using a variational autoencoder☆94Updated 7 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Paratope Prediction using Deep Learning☆59Updated 2 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆108Updated last year
- PaccMann models for protein language modeling☆42Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆87Updated 2 years ago
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆107Updated 10 months ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- A generative latent variable model for biological sequence families.☆226Updated 3 years ago
- Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes☆45Updated 5 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 4 months ago
- De novo protein structure prediction using iteratively predicted structural constraints☆58Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- ☆110Updated 3 years ago
- ☆36Updated 2 years ago
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆96Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆120Updated 3 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆76Updated 2 years ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆165Updated 2 years ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Updated 3 years ago
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆33Updated 2 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆80Updated 11 months ago