A new approach for representing biological sequences
☆101Sep 14, 2024Updated 2 years ago
Alternatives and similar repositories for biovec
Users that are interested in biovec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.☆34Dec 8, 2022Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Dec 28, 2020Updated 5 years ago
- ☆53Jul 23, 2020Updated 6 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- ☆128Feb 16, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- protein embedding project☆12May 3, 2018Updated 8 years ago
- DeepChem 2017: Deep Learning & NLP for Computational Chemistry, Biology & Nano-materials☆23Jan 2, 2018Updated 8 years ago
- iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide …☆200May 23, 2022Updated 4 years ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆21Aug 3, 2018Updated 8 years ago
- dna2vec: Consistent vector representations of variable-length k-mers☆193Jun 21, 2022Updated 4 years ago
- Alignment-free Protein Motif Miner☆15Nov 8, 2018Updated 7 years ago
- Protein function prediction using a variational autoencoder☆95Mar 7, 2018Updated 8 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22May 19, 2022Updated 4 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, …☆85Jul 20, 2022Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 3 years ago
- Cluster up to millions of peptide sequences on shared sequence motifs.☆13Oct 1, 2018Updated 7 years ago
- Code for paper "TrimNet: learning molecular representation from triplet messages for biomedicine "☆59Jun 29, 2023Updated 3 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- Molecular MHFP fingerprints for cheminformatics applications☆98Feb 16, 2023Updated 3 years ago
- machine learning, molecular descriptor☆122Apr 10, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction☆20Jan 8, 2020Updated 6 years ago
- A software package for computing features of peptides and proteins☆67May 8, 2026Updated 4 months ago
- Mol2vec - an unsupervised machine learning approach to learn vector representations of molecular substructures☆293Sep 19, 2022Updated 4 years ago
- maxsmi: a guide to SMILES augmentation. Find the optimal SMILES augmentation for accurate molecular prediction.☆35Feb 22, 2024Updated 2 years ago
- Large-scale comparison of machine learning methods for drug target prediction on ChEMBL☆35Sep 7, 2020Updated 6 years ago
- ☆19Oct 8, 2020Updated 5 years ago
- PDBe Programming Interfaces information☆14Jul 23, 2018Updated 8 years ago
- This project is meant to work as a template for a binary CNN classification problem☆13Dec 8, 2022Updated 3 years ago
- Get protein embeddings from protein sequences☆510Apr 28, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Python 3 version of the protein descriptor package propy☆48Updated this week
- A Recurrent Neural Network implementation that uses SMILES strings to generate molecules from GDB-13☆30Jul 4, 2019Updated 7 years ago
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆27Oct 22, 2020Updated 5 years ago
- A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.☆107Feb 25, 2021Updated 5 years ago
- DeepSMILES - A variant of SMILES for use in machine-learning☆146May 24, 2021Updated 5 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago