vli31 / CROTONLinks
Automated and variant-aware CRISPR/Cas9 editing outcome predictor
☆9Updated 3 years ago
Alternatives and similar repositories for CROTON
Users that are interested in CROTON are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- ☆27Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- ☆19Updated 4 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 6 months ago
- ☆16Updated last year
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆49Updated 5 months ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆14Updated 2 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 3 months ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- Conditional out-of-distribution prediction☆62Updated 11 months ago
- Single cell typing based on cell ontology☆52Updated last year
- ☆9Updated 2 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 4 years ago
- Code and example of the D-SPIN framework☆23Updated last month
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Python client for the OmniPath web service☆45Updated 3 weeks ago
- ☆12Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated 10 months ago