vli31 / CROTONLinks
Automated and variant-aware CRISPR/Cas9 editing outcome predictor
☆10Updated 4 years ago
Alternatives and similar repositories for CROTON
Users that are interested in CROTON are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 5 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Updated 2 years ago
- Single cell typing based on cell ontology☆53Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Automated Modelling for Biological Evidence-based Research☆47Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆48Updated 5 months ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- ☆27Updated 2 years ago
- Archetypal Analysis network (AAnet)☆39Updated 11 months ago
- ☆12Updated 5 years ago
- Biological Network Integration using Convolutions☆63Updated 2 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Updated 4 years ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆11Updated 4 years ago
- ☆27Updated 6 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Updated last year
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- ☆12Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 2 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25Updated 2 years ago
- Code and example of the D-SPIN framework☆24Updated last week
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated last year
- ACTIONet single-cell analysis framework