guma44 / ushuffleLinks
A useful tool for shuffling biological sequences while preserving the k-let counts
☆14Updated last year
Alternatives and similar repositories for ushuffle
Users that are interested in ushuffle are comparing it to the libraries listed below
Sorting:
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆43Updated 3 months ago
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19Updated last week
- Chromatin domains bursting with flavor☆12Updated 6 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- ☆19Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- Python port of the R Bioconductor `seqLogo` package☆35Updated 2 weeks ago
- Python wrapper for MaxEntScan to calculate splice site strength.☆17Updated 3 years ago
- Diverse sampling for single-cell datasets☆16Updated 5 years ago
- Core functionality of the CGAT code☆34Updated 5 months ago
- ☆52Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- ☆39Updated 7 months ago
- Annotated sequence data☆11Updated last year
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Updated 2 months ago
- ☆17Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated last year
- A fast dataloader for bigwig files made for machine learning☆29Updated last month
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- Python package to plot sequence logos☆29Updated 2 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆14Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 4 years ago