zhaoshuoxp / RSeqPlots
R scripts for NGS data visualization
☆12Updated last year
Alternatives and similar repositories for RSeqPlots:
Users that are interested in RSeqPlots are comparing it to the libraries listed below
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Updated last year
- Analysis of transposable elements☆10Updated 3 weeks ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated 8 months ago
- Perform GWAS with gemma in a simple pipeline☆26Updated 2 weeks ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- visual analysis of your VCF files☆32Updated 2 years ago
- ☆31Updated this week
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆30Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- tutorial on pggb☆34Updated 3 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated 2 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- The cattle Genotype-Tissue Expression atlas v1☆24Updated 2 years ago
- repository of scripts for comparative transcriptome analysis☆18Updated 6 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- an R/Shiny application for interactive creation of Circos plot☆48Updated 2 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- scripts used for processing and analyzing data in the article.☆13Updated 5 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- Scripts to convert between file formats for various analyses☆16Updated 2 months ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last month
- Instructions and helpful R code for Running GEMMA and GAPIT☆12Updated 7 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆14Updated 2 years ago
- Documentation for vcfR☆11Updated 2 years ago
- ☆20Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago