zhaoshuoxp / RSeqPlots
R scripts for NGS data visualization
☆12Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for RSeqPlots
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- Repository of common bioinformatics scripts☆38Updated 3 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆32Updated 2 months ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆24Updated 5 years ago
- repository of scripts for comparative transcriptome analysis☆18Updated 5 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆30Updated 7 months ago
- Scripts to convert between file formats for various analyses☆14Updated 3 months ago
- tips and tricks in genome-wide association studies - a tutorial☆13Updated last year
- ☆17Updated 4 years ago
- Working on cotton resequencing☆11Updated 4 years ago
- Customized codes used in Tibetan wheat sequencing project.☆13Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆25Updated 7 months ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated 2 months ago
- The cattle Genotype-Tissue Expression atlas v1☆22Updated last year
- visual analysis of your VCF files☆28Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆18Updated last year
- ☆12Updated 5 years ago
- An R framework for phylostratigraphy☆33Updated last year
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆18Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last year
- tutorial on pggb☆27Updated 10 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆33Updated 6 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆19Updated 2 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- ☆15Updated 9 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated 3 weeks ago