R scripts for NGS data visualization
☆13Oct 1, 2025Updated 5 months ago
Alternatives and similar repositories for RSeqPlots
Users that are interested in RSeqPlots are comparing it to the libraries listed below
Sorting:
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- ☆15Mar 7, 2025Updated last year
- Function Enrichment analysis and Network construction☆14Dec 10, 2025Updated 3 months ago
- GWAS analysis process based on EMMAX software☆18Dec 12, 2023Updated 2 years ago
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.☆16Feb 23, 2026Updated 2 weeks ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- several scripts for bioinformatics☆24Nov 27, 2025Updated 3 months ago
- Plant genome assembly and annotation pipeline using snakemake☆53May 14, 2025Updated 9 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Sep 1, 2021Updated 4 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Jan 17, 2024Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 6 months ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated last month
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 4 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Feb 28, 2024Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- collection of bioinformatic scripts☆32May 3, 2024Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆42Mar 3, 2026Updated last week
- ☆13Updated this week
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- This is a ggplot2 geom for plotting and comparing the ROC curves☆10Jul 6, 2016Updated 9 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last week
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- Repository☆10Oct 23, 2024Updated last year
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- A multi-country analysis of the short-term mortality risks of sulphur dioxide☆12Feb 13, 2025Updated last year
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- 一些关于基因组及转录组的知识☆40Dec 29, 2025Updated 2 months ago
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated 10 months ago
- ☆14Oct 27, 2025Updated 4 months ago