A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module visualization, and multi-sample integration
☆25Apr 3, 2026Updated 6 months ago
Alternatives and similar repositories for Smoothie
Users that are interested in Smoothie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆17Dec 15, 2025Updated 9 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 5 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- From geospatial to spatial -omics☆105Sep 26, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Jun 15, 2024Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- The official QuPath extension for InstanSeg