Code associated with the data analysis for Miyoshi & Morabito 2024
☆31Jul 8, 2025Updated last year
Alternatives and similar repositories for DSAD_Spatial_Miyoshi_Morabito_2024
Users that are interested in DSAD_Spatial_Miyoshi_Morabito_2024 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated 2 years ago
- ☆36Oct 22, 2025Updated last year
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated 2 years ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆15Oct 23, 2024Updated 2 years ago
- A Snakemake pipeline for Xenium data analysis.☆31Jul 22, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆14Oct 19, 2026Updated 2 weeks ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆53Dec 16, 2024Updated last year
- A public MuSpAn page for community discussions and issue reporting.☆26Sep 2, 2026Updated 2 months ago
- ☆23Jul 15, 2025Updated last year
- From geospatial to spatial -omics☆107Sep 26, 2026Updated last month
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆19Jun 29, 2022Updated 4 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆19Mar 14, 2025Updated last year
- ☆29Apr 1, 2025Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆122Jun 9, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cell type-specific SVG detection☆10Jan 28, 2026Updated 9 months ago
- Extension of SpatialExperiment with sf☆59Updated this week
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆17Dec 15, 2025Updated 10 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆99Jul 1, 2021Updated 5 years ago
- ☆18Feb 12, 2026Updated 8 months ago
- scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis☆15Updated this week
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆17Nov 25, 2025Updated 11 months ago
- SMR-IVW extension of the SMR software☆10Mar 17, 2023Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Notebooks for reproducing figures in the Spectra paper☆13Jun 7, 2023Updated 3 years ago
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆25Dec 10, 2024Updated last year
- Pattern Analysis of SpaTial omics datA☆13Jun 13, 2025Updated last year
- ☆57Sep 2, 2026Updated 2 months ago
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆26Apr 3, 2026Updated 7 months ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- ☆12Feb 19, 2021Updated 5 years ago
- ☆48Oct 10, 2026Updated 3 weeks ago
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- MultiSuSiE is a multi-ancestry extension of the Sum of Single Effects model☆23Sep 28, 2026Updated last month
- Create Regional Association Plots☆14May 27, 2026Updated 5 months ago
- CoCo-ST operates by taking two ST data sets as inputs: one serving as the reference and another as the target. These ST data sets typical…☆10Jul 2, 2026Updated 4 months ago
- ☆10Oct 7, 2024Updated 2 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆77Dec 13, 2024Updated last year
- ☆13Sep 30, 2024Updated 2 years ago
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago