slowkow / CENTIPEDE.tutorialLinks
How to use CENTIPEDE to determine if a transcription factor is bound.
☆26Updated 7 years ago
Alternatives and similar repositories for CENTIPEDE.tutorial
Users that are interested in CENTIPEDE.tutorial are comparing it to the libraries listed below
Sorting:
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆134Updated last year
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- ☆78Updated 11 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- R package for genomic feature analysis and visualization☆79Updated 7 months ago