How to use CENTIPEDE to determine if a transcription factor is bound.
☆26Mar 18, 2018Updated 8 years ago
Alternatives and similar repositories for CENTIPEDE.tutorial
Users that are interested in CENTIPEDE.tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Aug 17, 2016Updated 9 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- ☆14Jun 14, 2019Updated 6 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- R package with netDx software and data for examples☆13Feb 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- TFFM framework☆13Sep 22, 2025Updated 6 months ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago
- Easily draw publication-quality figures of splicing quantitative trait loci☆16Feb 2, 2018Updated 8 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Sep 14, 2018Updated 7 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- Stickers for some Bioconductor packages - feel free to contribute and/or modify.☆136Mar 23, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 3 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 5 months ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- ☆12May 26, 2016Updated 9 years ago
- ☆10Oct 24, 2024Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Feb 14, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆11Jun 17, 2023Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 9 months ago
- Representation of Module Activity☆10May 31, 2017Updated 8 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated last month
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work☆14Jan 10, 2021Updated 5 years ago
- Code for the data processing pipeline☆17Jun 21, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆31Nov 28, 2024Updated last year
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- ☆12Dec 12, 2018Updated 7 years ago
- ☆10Dec 11, 2024Updated last year
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Aug 15, 2024Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆17Aug 12, 2022Updated 3 years ago
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago