pachterlab / bears_analysesLinks
Examples of kallisto + sleuth
☆11Updated 8 years ago
Alternatives and similar repositories for bears_analyses
Users that are interested in bears_analyses are comparing it to the libraries listed below
Sorting:
- home of the bear's lair☆10Updated 8 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 4 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 8 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated last year
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 8 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 2 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆30Updated 3 months ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- Bioconductor components for general cancer genomics☆11Updated 3 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Updated 4 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago