pachterlab / BBB
Bioinformatics for Benched Biologists
☆22Updated 4 years ago
Alternatives and similar repositories for BBB:
Users that are interested in BBB are comparing it to the libraries listed below
- ☆17Updated 8 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated this week
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 10 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Mean Alterations Using Discrete Expression☆14Updated 9 months ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- ☆9Updated 4 years ago
- Create QC and summary reports for Alevin output☆31Updated 3 weeks ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated last month
- Snakemake pipeline for running MAJIQ☆19Updated last year
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated 4 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago