xguse / cookiecutter-snakemake-analysis-pipelineLinks
A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
☆16Updated 9 years ago
Alternatives and similar repositories for cookiecutter-snakemake-analysis-pipeline
Users that are interested in cookiecutter-snakemake-analysis-pipeline are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Customer workshop materials☆18Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- ☆22Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- ☆13Updated 8 years ago
- The command-line interface to GGD☆42Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Docker containers for bioinformatics with a small footprint☆23Updated 2 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Updated 10 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- BED QC tool (in the making)☆16Updated 3 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Snakemake skeleton - Build workflows with Snakemake☆19Updated last year
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Variant catalogue pipeline☆25Updated 4 months ago
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago