mousepixels / sanbomicsLinks
bioinformatics plotting and tools
☆59Updated last year
Alternatives and similar repositories for sanbomics
Users that are interested in sanbomics are comparing it to the libraries listed below
Sorting:
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated 2 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 6 months ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆72Updated last week
- flexible CDR based distance metrics☆67Updated this week
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆50Updated 5 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆62Updated last week
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- ☆41Updated 5 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated last year
- ☆67Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆50Updated last week
- ☆44Updated last year
- InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.☆112Updated last week
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated last month
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Updated 7 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆65Updated last week
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated 3 weeks ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆50Updated 9 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 7 months ago
- ☆19Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated 3 weeks ago
- ☆57Updated 5 months ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- ☆24Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Unified knowledge-driven network inference from omics data☆87Updated 3 weeks ago
- Code related to the Celligner manuscript☆46Updated 5 years ago