High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
☆55Aug 11, 2025Updated last year
Alternatives and similar repositories for 2022_Haghighi_NatureMethods
Users that are interested in 2022_Haghighi_NatureMethods are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆34Mar 20, 2026Updated 4 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Mar 30, 2023Updated 3 years ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- ☆72Feb 14, 2025Updated last year
- ☆19Jul 8, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Jan 20, 2022Updated 4 years ago
- ☆35Jun 2, 2026Updated 2 months ago
- DNA Encoded Library Data Analysis toolkit for DEL data analysis☆10Jun 12, 2025Updated last year
- Images and other data from the JUMP Cell Painting Consortium☆187Aug 10, 2026Updated last week
- ☆10Jul 3, 2018Updated 8 years ago
- Morandi color palette for R plot☆11Nov 20, 2020Updated 5 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆15Aug 5, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- ☆20May 20, 2021Updated 5 years ago
- ☆71Jul 21, 2023Updated 3 years ago
- Cross Modality Optimal Transport for multimodal inference☆10Nov 29, 2024Updated last year
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 5 years ago
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated 3 weeks ago
- ☆12Aug 29, 2024Updated last year
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Documentation for the cellxgene product☆18Sep 13, 2022Updated 3 years ago
- ☆22Jan 13, 2026Updated 7 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆30Feb 9, 2025Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆393Feb 1, 2025Updated last year
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated last year
- The code for "Learning Molecular Representation in a Cell"☆43Mar 6, 2025Updated last year
- A repository for reproducing experiments from the TxPert paper☆44Mar 25, 2026Updated 4 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Jul 27, 2023Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆116Sep 27, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Contextual AI models for single-cell protein biology☆110May 7, 2026Updated 3 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆149Aug 14, 2024Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Aug 3, 2026Updated 2 weeks ago
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆24May 9, 2026Updated 3 months ago
- Cell Painting Gallery☆137Updated this week
- ☆69Jun 11, 2025Updated last year
- ☆95Aug 10, 2026Updated last week