Alternatives and similar repositories for 2022_Haghighi_NatureMethods:

Users that are interested in 2022_Haghighi_NatureMethods are comparing it to the libraries listed below

• theislab / prophet
  ☆30Updated last week
• theislab / scTab
  ☆57Updated 6 months ago
• shuxiaoc / maxfuse
  ☆50Updated 10 months ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆22Updated 8 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆33Updated 5 years ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆32Updated 2 months ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆19Updated last month
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• TencentAILabHealthcare / scTranslator
  ☆36Updated 8 months ago
• lilab-bcb / harmony-pytorch
  ☆51Updated last week
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆38Updated 2 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆119Updated last month
• AI4SCR / ATHENA
  ☆31Updated 2 months ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆19Updated 3 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆31Updated last week
• theislab / multicpa
  ☆14Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆36Updated 2 years ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆58Updated last week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆56Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆56Updated 10 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 10 months ago
• suinleelab / contrastiveVI
  ☆53Updated last year
• openproblems-bio / openproblems-v2
  Formalizing and benchmarking open problems in single-cell genomics
  ☆56Updated 4 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 5 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆18Updated 3 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 2 months ago