MaayanLab / blitzgsea
Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.
☆46Updated last week
Alternatives and similar repositories for blitzgsea:
Users that are interested in blitzgsea are comparing it to the libraries listed below
- ☆42Updated 5 months ago
- ☆51Updated this week
- Molecular interactions inference from single-cell multi-omics data☆22Updated 4 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆60Updated last year
- pseudobulking on an AnnData object☆29Updated 2 weeks ago
- Signac☆25Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆51Updated 7 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆56Updated 11 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated last year
- bioinformatics plotting and tools☆56Updated 9 months ago
- Single cell omics biology annotations☆50Updated 3 weeks ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- Code and documentation for the curation of cellxgene datasets☆42Updated this week
- Geometry-preserving random sampling☆80Updated 5 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆48Updated 8 months ago
- ☆41Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Using BCR and expression for sequence embedding☆21Updated 3 weeks ago
- metadata and data from the database☆40Updated 5 years ago
- Unified knowledge-driven network inference from omics data☆33Updated 2 weeks ago
- ☆35Updated 3 weeks ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 6 months ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆40Updated last week
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 3 weeks ago
- ☆24Updated 2 months ago