MaayanLab / blitzgseaLinks
Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.
☆51Updated 4 months ago
Alternatives and similar repositories for blitzgsea
Users that are interested in blitzgsea are comparing it to the libraries listed below
Sorting:
- bioinformatics plotting and tools☆59Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- ☆44Updated 10 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 5 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- Molecular interactions inference from single-cell multi-omics data☆27Updated 3 weeks ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- ☆55Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆46Updated this week
- Functional Associations using Variational Autoencoders☆40Updated last month
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last month
- Multi-omics factor analysis v2☆50Updated 10 months ago
- Using BCR and expression for sequence embedding☆25Updated this week
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated 3 weeks ago
- ☆65Updated 10 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 6 months ago
- ☆44Updated last month
- Builds a PEP from SRA or GEO accessions☆53Updated 2 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆19Updated last year
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- A python package for chromVAR☆30Updated 2 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆93Updated 8 months ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 9 months ago
- flexible CDR based distance metrics☆66Updated last year
- Unified knowledge-driven network inference from omics data☆79Updated last month
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆45Updated 4 years ago