Alternatives and similar repositories for gwas-summary-statistics-standard

Users that are interested in gwas-summary-statistics-standard are comparing it to the libraries listed below

• weizhou0 / GATE
  ☆22Updated 2 years ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated last year
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• MRCIEU / gwas2vcf
  Convert GWAS summary statistics to VCF
  ☆48Updated 2 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 6 months ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆73Updated this week
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆82Updated this week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆53Updated 4 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated last month
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 3 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆49Updated 3 months ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆23Updated this week
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆58Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• clagiamba / moloc
  ☆36Updated 4 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆27Updated last month
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆48Updated 2 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated last week
• FINNGEN / finemapping-pipeline
  Statistical fine-mapping pipeline in FinnGen
  ☆30Updated 3 months ago
• lukfor / pgs-calc
  Applying polygenic scores (PGS) on imputed genotypes
  ☆31Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆54Updated 3 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated 11 months ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆60Updated 6 years ago
• fhormoz / caviar
  ☆62Updated 3 years ago
• FinucaneLab / pops
  ☆82Updated last month
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated 3 months ago