Alternatives and similar repositories for MungeSumstats

Users that are interested in MungeSumstats are comparing it to the libraries listed below

• chr1swallace / coloc
  Repo for the R package coloc
  ☆169Updated 2 months ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆96Updated 3 weeks ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆115Updated 2 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆118Updated 3 weeks ago
• josefin-werme / LAVA
  ☆72Updated this week
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆57Updated 11 months ago
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆88Updated 4 months ago
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆141Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated 3 weeks ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆120Updated 7 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• jean997 / cause
  R package for CAUSE
  ☆56Updated last year
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆54Updated last year
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆90Updated last year
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆54Updated 4 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆64Updated last month
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆23Updated 2 weeks ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆51Updated 2 months ago
• gamazonlab / MR-JTI
  ☆57Updated 6 months ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• cran / MendelianRandomization
   This is a read-only mirror of the CRAN R package repository. MendelianRandomization — Mendelian Randomization Package
  ☆45Updated last year
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆84Updated last month
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆66Updated 9 months ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆28Updated 5 years ago
• precimed / mixer
  Causal Mixture Model for GWAS summary statistics
  ☆80Updated last year
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆68Updated 4 years ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆190Updated 2 years ago