Alternatives and similar repositories for gwas-sumstats-harmoniser:

Users that are interested in gwas-sumstats-harmoniser are comparing it to the libraries listed below

• clagiamba / moloc
  ☆35Updated 4 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 6 months ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆45Updated last week
• cuelee / pleio
  ☆19Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆59Updated 6 months ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• weizhou0 / GATE
  ☆22Updated last year
• thewonlab / H-MAGMA
  ☆32Updated last year
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 5 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated 6 months ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆42Updated last month
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated last month
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 11 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 9 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆49Updated 2 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆34Updated 4 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆33Updated 3 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆32Updated last month
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆39Updated last year
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 10 months ago