JianYang-Lab / gsmr2Links
The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics to test for a putative causal association between two phenotypes (e.g., a modifiable risk factor and a disease) based on a multi-SNP model
☆17Updated last year
Alternatives and similar repositories for gsmr2
Users that are interested in gsmr2 are comparing it to the libraries listed below
Sorting:
- ☆21Updated 3 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Updated last year
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆31Updated last week
- Tissue-Gene Fine-Mapping☆26Updated 10 months ago
- ☆20Updated 4 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆35Updated 5 years ago
- ☆21Updated 2 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Updated 4 months ago
- ☆23Updated 3 weeks ago
- ☆13Updated 3 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 4 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- Create Regional Association Plots☆13Updated 4 months ago
- ☆19Updated 5 months ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Updated 4 years ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆39Updated 11 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆57Updated last month
- ☆30Updated 4 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- Estimate genetic correlation using predicted expression☆23Updated 7 years ago
- An R package for creating ggplot2 based miami plots.☆18Updated 10 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 6 months ago
- Regional association plots☆24Updated last year
- ☆27Updated 5 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Updated 3 weeks ago
- ☆40Updated 2 weeks ago
- SCALLOP-INF analysis☆20Updated 3 months ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago