JianYang-Lab / gsmr2Links
The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics to test for a putative causal association between two phenotypes (e.g., a modifiable risk factor and a disease) based on a multi-SNP model
☆17Updated last year
Alternatives and similar repositories for gsmr2
Users that are interested in gsmr2 are comparing it to the libraries listed below
Sorting:
- ☆21Updated 2 years ago
- ☆16Updated 5 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated 10 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 4 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Updated 6 months ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Updated 4 years ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆19Updated last month
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆27Updated 2 weeks ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- ☆18Updated last month
- ☆20Updated 2 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 3 years ago
- ☆19Updated last year
- An R package for creating ggplot2 based miami plots.☆17Updated 5 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 6 months ago
- ☆28Updated 3 years ago
- ☆24Updated 4 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆15Updated last year
- FLAMES: Accurate gene prioritization in GWAS loci☆41Updated 5 months ago
- Create Regional Association Plots☆12Updated last year
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- GENI plots to visualise results from genome-wide association studies☆29Updated 9 months ago
- Integration of TWAS and Colocalization Analysis☆17Updated 9 months ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 4 months ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆31Updated 2 months ago
- ☆11Updated 3 years ago
- Tissue-Gene Fine-Mapping☆21Updated 4 months ago