rickyota / CSMLLinks
Cell Segmenter using Machine Learning
☆10Updated 2 years ago
Alternatives and similar repositories for CSML
Users that are interested in CSML are comparing it to the libraries listed below
Sorting:
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- ☆24Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Updated last year
- Cloud-based data annotation tools for biological images☆84Updated last year
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated this week
- Three dimensional cross-modal image inference☆161Updated 3 months ago
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Updated 6 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- multimodal whole slide image registration in a graph structure☆100Updated last year
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 6 months ago
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- ☆24Updated 2 years ago
- ☆32Updated 6 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ☆18Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago
- U-net based segmentation of nuclei in microscopy images☆53Updated 7 years ago
- Read and write life sciences file formats☆142Updated 7 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Updated 3 years ago
- The ImageJ plugin to run deep-learning models☆97Updated 3 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆23Updated 2 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago