nolanlab / cytofCoreLinks
R package for working with CyToF data
☆27Updated 5 years ago
Alternatives and similar repositories for cytofCore
Users that are interested in cytofCore are comparing it to the libraries listed below
Sorting:
- R package for pre-processing of mass and flow cytometry data☆47Updated 3 years ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆60Updated 5 years ago
- SPADE: Spanning Tree Progression of Density Normalized Events☆49Updated 9 years ago
- A package that provides data analysis pipeline for flow cytometry.☆80Updated 5 months ago
- Citrus Development Code☆31Updated last year
- Cytometry dATa anALYsis Tools☆75Updated 2 months ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Updated 4 months ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆16Updated last year
- R package for differential discovery analyses in high-dimensional cytometry data☆22Updated last year
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 5 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Clone of the Bioconductor repository for the scater package.☆95Updated 3 weeks ago
- R package for analyzing single-cell RNA-seq data☆179Updated last year
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75Updated 7 months ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 9 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Updated 2 years ago
- An R interface to enrichR☆94Updated last year
- Topics In Data Science and Bioinformatics☆79Updated last year
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Updated 2 months ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- R data package for annotating/converting Gene IDs☆168Updated 7 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆151Updated 11 months ago
- Batch effects and the effective design of single-cell gene expression studies☆104Updated 6 years ago
- Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology☆95Updated last year
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆119Updated 5 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆70Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago