Alternatives and similar repositories for cytofCore

Users that are interested in cytofCore are comparing it to the libraries listed below

• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆59Updated 5 years ago
• RGLab / openCyto
  A package that provides data analysis pipeline for flow cytometry.
  ☆79Updated 4 months ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆70Updated last month
• ParkerICI / premessa
  R package for pre-processing of mass and flow cytometry data
  ☆46Updated 3 years ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆96Updated 9 months ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 8 years ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆177Updated last year
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• drisso / bioc2016singlecell
  Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
  ☆80Updated 9 years ago
• nolanlab / citrus
  Citrus Development Code
  ☆31Updated last year
• drisso / SingleCellExperiment
  Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…
  ☆75Updated 6 months ago
• JinmiaoChenLab / Rphenograph
  Rphenograph: R implementation of the PhenoGraph algorithm
  ☆50Updated 5 years ago
• sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
  R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
  ☆66Updated 7 years ago
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆21Updated 10 months ago
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 4 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated 5 months ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• nolanlab / spade
  SPADE: Spanning Tree Progression of Density Normalized Events
  ☆49Updated 9 years ago
• saeyslab / CytoNorm
  R library to normalize cytometry data
  ☆38Updated 2 weeks ago
• KrishnaswamyLab / phateR
  PHATE dimensionality reduction method implemented in R
  ☆81Updated 4 years ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆107Updated 2 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆145Updated 8 months ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 11 months ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆61Updated 6 years ago
• jdblischak / singleCellSeq
  Batch effects and the effective design of single-cell gene expression studies
  ☆104Updated 6 years ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆67Updated last month
• catavallejos / BASiCS
  BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…
  ☆85Updated 3 months ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆37Updated 2 years ago