MotomuMatsui / gs

Related projects ⓘ

Alternatives and complementary repositories for gs

• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• MoMI-G / MoMI-G
  Modular Multi-scale Integrated Genome Graph Browser
  ☆87Updated 2 weeks ago
• evolbioinfo / booster
  ☆27Updated 4 years ago
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆97Updated 3 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆88Updated 11 months ago
• kfuku52 / csubst
  Molecular convergence detection
  ☆30Updated 3 weeks ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆52Updated 3 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆110Updated last year
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 3 years ago
• sagnikbanerjee15 / Finder
  A fully automated gene annotator from RNA-Seq expression data
  ☆57Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆111Updated 3 months ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆84Updated last year
• shoichisakaguchi / NeoRdRp
  ☆20Updated 6 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆51Updated last week
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆141Updated 2 years ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆76Updated 2 years ago
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆83Updated last month
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆69Updated last month
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆63Updated 4 months ago
• epi2me-labs / wf-basecalling
  ☆34Updated last week
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 3 years ago
• apetkau / orthomcl-pipeline
  Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
  ☆80Updated 4 years ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆84Updated last year
• SamStudio8 / reticulatus
  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
  ☆69Updated 3 years ago
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆32Updated last month
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated 2 months ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆103Updated 3 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆85Updated last month
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆28Updated 3 months ago