Christina-hshi / psircView external linksLinks
Full-length linear and circular transcript isoform reconstruction and quantification
☆11Jun 17, 2024Updated last year
Alternatives and similar repositories for psirc
Users that are interested in psirc are comparing it to the libraries listed below
Sorting:
- circular RNA quantification tools☆31Jun 17, 2024Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆12May 8, 2025Updated 9 months ago
- direct comparison of circular and linear RNA expression☆23Jan 17, 2021Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆45Nov 16, 2017Updated 8 years ago
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 3 months ago
- CircSplice☆12Feb 27, 2019Updated 6 years ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Jan 31, 2026Updated 2 weeks ago
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 6 months ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆11Jul 25, 2025Updated 6 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 4 months ago
- Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).☆17Jan 17, 2023Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Jan 16, 2025Updated last year
- microRNA PREdiction From small RNA-seq data☆31Dec 28, 2017Updated 8 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 5 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- 4C-seq processing pipeline☆26Mar 17, 2025Updated 10 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Dec 22, 2020Updated 5 years ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆13Oct 16, 2025Updated 4 months ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- ☆60Jul 17, 2025Updated 6 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- ☆29Apr 23, 2025Updated 9 months ago
- Filtering of PDX samples for mouse derived reads☆28Jan 12, 2026Updated last month
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Sep 5, 2019Updated 6 years ago
- ☆36Feb 1, 2022Updated 4 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆37Sep 17, 2021Updated 4 years ago
- Comprehensive analysis of small RNA sequencing data☆35May 14, 2025Updated 9 months ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- ☆12Apr 5, 2022Updated 3 years ago
- Designs for 3D printed parts that were developed in the Zhuang Lab.☆11Dec 2, 2020Updated 5 years ago
- Group Based Modeling Trajectory☆13Jun 8, 2025Updated 8 months ago