gxiaolab / REDITs
RNA editing tests
☆16Updated 4 years ago
Alternatives and similar repositories for REDITs:
Users that are interested in REDITs are comparing it to the libraries listed below
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆16Updated 6 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- ☆23Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆13Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆22Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated last month
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last week
- Micro DNA identification☆22Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 7 months ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Tutorial Website☆56Updated 4 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 2 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 3 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago