gxiaolab / REDITsLinks
RNA editing tests
☆17Updated 5 years ago
Alternatives and similar repositories for REDITs
Users that are interested in REDITs are comparing it to the libraries listed below
Sorting:
- Tutorial Website☆61Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated last month
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆82Updated 8 months ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆16Updated 5 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated last year
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆26Updated 3 months ago
- ☆13Updated 8 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- Links to ATAC-seq analysis tools☆75Updated 4 years ago