Human reference genome analysis sets
☆62Jun 17, 2023Updated 3 years ago
Alternatives and similar repositories for ref-gen
Users that are interested in ref-gen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Targeted genotyper for complex polymorphic genes☆47Aug 25, 2026Updated last week
- Genome-in-a-Bottle stratifications for major references☆15Apr 28, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated last month
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 6 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Aug 24, 2026Updated last week
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 11 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 11 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Jul 3, 2026Updated 2 months ago
- Fast FASTX parsing and k-mer methods in Rust☆214Jun 22, 2026Updated 2 months ago
- ☆22Apr 15, 2024Updated 2 years ago
- Successor of bwa-mem for short-read alignment☆335Aug 13, 2026Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 4 months ago
- ☆23Aug 28, 2026Updated last week
- Model files for Sentieon variant callers☆17Jul 23, 2026Updated last month
- an API for intersections of genomic data☆149Mar 12, 2026Updated 5 months ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Jul 31, 2020Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆30Sep 21, 2024Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆90Updated this week
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated 3 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 5 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆87Updated this week
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆21Jun 13, 2022Updated 4 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28May 19, 2026Updated 3 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆31Aug 3, 2026Updated last month
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 4 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Updated this week
- ☆12Apr 18, 2022Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated last month
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆26Jul 28, 2026Updated last month
- Splice junction analysis and filtering from BAM files☆44Mar 31, 2022Updated 4 years ago