GooglingTheCancerGenome / sv-callers
Snakemake-based workflow for detecting structural variants in genomic data
☆80Updated last month
Alternatives and similar repositories for sv-callers:
Users that are interested in sv-callers are comparing it to the libraries listed below
- Tip and tricks for BAM files☆84Updated 6 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 9 months ago
- Somatic structural variant caller for long-read data☆60Updated last week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆62Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆84Updated this week
- ☆39Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- ☆48Updated 6 months ago
- Fast and accurate coordinate conversion between assemblies☆112Updated 5 months ago
- TIDDIT - structural variant calling☆74Updated this week
- ☆54Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated last month
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- QDNAseq package for Bioconductor☆49Updated 7 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- ☆67Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆107Updated last month
- Methylation Phasing for Nanopore Sequencing☆46Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago