Snakemake-based workflow for detecting structural variants in genomic data
☆84Feb 14, 2025Updated last year
Alternatives and similar repositories for sv-callers
Users that are interested in sv-callers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- Snakemake workflow for the vg toolkit.☆12Mar 19, 2026Updated 6 months ago
- Tools for processing and analyzing structural variants.☆158May 2, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 6 years ago
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Structural variation and indel detection by local assembly☆259Aug 19, 2026Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 7 months ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 7 months ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 8 months ago
- Relevant papers for CNV and SV approaches☆95Nov 5, 2024Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated last month
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- A structural variation pipeline for short-read sequencing☆209Updated this week
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 5 years ago
- Structural variant benchmark☆25Mar 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 6 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆537Oct 5, 2026Updated last week
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 6 years ago
- Pangenome-based genome inference☆182Sep 15, 2026Updated last month