Snakemake-based workflow for detecting structural variants in genomic data
☆82Feb 14, 2025Updated last year
Alternatives and similar repositories for sv-callers
Users that are interested in sv-callers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆416Dec 1, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 7 years ago
- Jasmine: SV Merging Across Samples☆251Dec 20, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Structural variant and indel caller for mapped sequencing data☆463Oct 11, 2025Updated 6 months ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Graph realignment tools for structural variants☆167Dec 8, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 2 months ago
- Structural variation and indel detection by local assembly☆255Apr 30, 2026Updated last week
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated 11 months ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 2 months ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Toolkit for calling structural variants using short or long reads☆115Apr 28, 2026Updated last week
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Nov 5, 2024Updated last year
- A structural variation pipeline for short-read sequencing☆202Updated this week
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆514Feb 26, 2026Updated 2 months ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 5 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- ☆35Aug 18, 2024Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago