Alternatives and similar repositories for oncoanalyser

Users that are interested in oncoanalyser are comparing it to the libraries listed below

• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆37Updated last month
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆82Updated 11 months ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆152Updated last month
• nf-core / hlatyping
  Precision HLA typing from next-generation sequencing data
  ☆76Updated last week
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆77Updated 2 months ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated 4 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆100Updated last year
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆87Updated 2 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆87Updated last week
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated last year
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆57Updated this week
• pwwang / vcfstats
  Powerful statistics for VCF files
  ☆73Updated 2 months ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆75Updated last year
• sbslee / fuc
  Frequently used commands in bioinformatics
  ☆58Updated last year
• lpryszcz / bin
  My bioinfo toolbox
  ☆50Updated 11 months ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆79Updated last year
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated last year
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆78Updated last month
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆117Updated last year
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 8 months ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆93Updated 5 months ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆83Updated 2 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last month
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated last month
• imgag / ClinCNV
  Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
  ☆91Updated 4 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated last month
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆55Updated last year
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆99Updated 3 years ago