nf-core / oncoanalyser
A comprehensive cancer DNA/RNA analysis and reporting pipeline
☆66Updated this week
Alternatives and similar repositories for oncoanalyser:
Users that are interested in oncoanalyser are comparing it to the libraries listed below
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Somatic structural variant caller for long-read data☆65Updated 2 weeks ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- ☆68Updated last year
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- ☆47Updated 7 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated last week
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- ☆39Updated 11 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated this week
- TIDDIT - structural variant calling☆74Updated last week
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆68Updated 7 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated 2 weeks ago
- Frequently used commands in bioinformatics☆55Updated 6 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- Reference genome resource manager☆76Updated last year
- ☆38Updated last month
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆61Updated last year
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago