nf-core / taxprofilerLinks
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
☆154Updated last week
Alternatives and similar repositories for taxprofiler
Users that are interested in taxprofiler are comparing it to the libraries listed below
Sorting:
- BSR-Based Allele Calling Algorithm☆147Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆151Updated 2 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆214Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆231Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- Assembly and binning of metagenomes☆239Updated this week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆139Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- A user-friendly workflow for phylogenomics☆214Updated last week
- ☆211Updated 5 months ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Metagenomic classification of long-read sequencing data☆85Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆149Updated 3 weeks ago
- snipit: summarise snps relative to your reference sequence☆161Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆214Updated 3 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆147Updated 3 months ago
- ☆137Updated last year
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆207Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆190Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆144Updated this week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆158Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- ☆198Updated 2 months ago
- Pan-genome wide association studies☆197Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Bacterial ribosomal RNA predictor☆246Updated last year
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆162Updated last week