nf-core / taxprofilerLinks
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
☆155Updated last week
Alternatives and similar repositories for taxprofiler
Users that are interested in taxprofiler are comparing it to the libraries listed below
Sorting:
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- A user-friendly workflow for phylogenomics☆214Updated last week
- Assembly and intrahost/low-frequency variant calling for viral samples☆138Updated last week
- snipit: summarise snps relative to your reference sequence☆163Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆233Updated last week
- ☆137Updated last year
- DAS Tool☆153Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated last week
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆191Updated 2 months ago
- Pan-genome wide association studies☆197Updated last year
- Making whole bacterial genome sequencing data analysis easy☆108Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago
- ☆200Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆79Updated last week
- Bioinformatics Tools☆87Updated 2 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Convert various sequence formats to FASTA☆136Updated 2 years ago
- ☆212Updated 5 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆89Updated this week
- Ultra-fast preprocessing and quality control for long-read sequencing data☆160Updated last week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated last month
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆153Updated last week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆195Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆202Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆155Updated last year