Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
☆36Oct 7, 2026Updated this week
Alternatives and similar repositories for metatdenovo
Users that are interested in metatdenovo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- Assembly and binning of metagenomes☆321Sep 29, 2026Updated last week
- (Meta-)genome screening for functional and natural product gene sequences☆119Sep 21, 2026Updated 2 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆192Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Updated this week
- A pipeline to investigate horizontal gene transfer from NGS data☆27Sep 11, 2026Updated 3 weeks ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆42Sep 16, 2026Updated 3 weeks ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆35Updated this week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆44Jul 28, 2026Updated 2 months ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 4 months ago
- ☆12Dec 22, 2025Updated 9 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆261Sep 30, 2026Updated last week
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated last month
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 10 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Sep 28, 2026Updated last week
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Updated this week
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated last month
- Surveillance of pathogens using population genomics and sequencing☆62Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- From metagenomes to epitopes and beyond☆12Sep 1, 2026Updated last month
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Jul 2, 2022Updated 4 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 5 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Nextflow training material☆274Updated this week
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jul 28, 2026Updated 2 months ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Sep 1, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated last month
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Sep 16, 2026Updated 3 weeks ago
- ☆16Aug 10, 2026Updated last month
- ☆18Aug 27, 2026Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆200Updated this week
- less like viewer for fastq files☆27Jul 31, 2026Updated 2 months ago