Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
☆36Sep 17, 2026Updated this week
Alternatives and similar repositories for metatdenovo
Users that are interested in metatdenovo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Updated this week
- Assembly and binning of metagenomes☆320Updated this week
- (Meta-)genome screening for functional and natural product gene sequences☆118Updated this week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆194Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆45May 2, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Sep 11, 2026Updated last week
- A pipeline to investigate horizontal gene transfer from NGS data☆27Sep 11, 2026Updated last week
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆40Updated this week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆35Jul 28, 2026Updated last month
- Pipeline for the identification of (coding) gene structures in draft genomes.☆44Jul 28, 2026Updated last month
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- ☆12Dec 22, 2025Updated 8 months ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 3 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆259Sep 1, 2026Updated 2 weeks ago
- Set of tools for viral metagenomics.☆17Aug 17, 2026Updated last month
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 9 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Sep 11, 2026Updated last week
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Sep 8, 2026Updated last week
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated last month
- Surveillance of pathogens using population genomics and sequencing☆61Sep 3, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- From metagenomes to epitopes and beyond☆12Sep 1, 2026Updated 2 weeks ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 4 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 4 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Nextflow training material☆271Updated this week
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jul 28, 2026Updated last month
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Sep 1, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last week
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Updated this week
- ☆16Aug 10, 2026Updated last month
- ☆18Aug 27, 2026Updated 3 weeks ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆201Updated this week
- less like viewer for fastq files☆26Jul 31, 2026Updated last month