Alternatives and similar repositories for metatdenovo

Users that are interested in metatdenovo are comparing it to the libraries listed below

• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆96Updated last week
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆32Updated 5 months ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆95Updated 2 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆79Updated last week
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆117Updated last week
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆90Updated this week
• metashot / awemags
  aweMAGs: a fully automated workflow for eukariotic MAGs
  ☆17Updated 2 years ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆51Updated 3 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆114Updated 5 months ago
• pirovc / ganon
  ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…
  ☆102Updated last week
• bede / hostile
  Precise host read removal
  ☆108Updated 2 months ago
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆54Updated 2 years ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆63Updated 9 months ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆101Updated last month
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆46Updated 2 years ago
• rrwick / Metagenomics-Index-Correction
  ☆84Updated 2 years ago
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆129Updated 3 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆85Updated 2 years ago
• jhawkey / IS_mapper
  IS mapping software
  ☆57Updated 3 years ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated last month
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆63Updated last month
• vinuesa / get_phylomarkers
  A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…
  ☆59Updated 10 months ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆75Updated last year
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆34Updated 2 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆32Updated 2 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆170Updated this week
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆101Updated 3 years ago
• cmkobel / CompareM2
  🦠🧬🧑‍💻📇 Microbial genomes-to-report pipeline
  ☆73Updated 2 weeks ago
• FOI-Bioinformatics / flextaxd
  FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…
  ☆67Updated 8 months ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆27Updated 8 months ago