Alternatives and similar repositories for metatdenovo:

Users that are interested in metatdenovo are comparing it to the libraries listed below

• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆80Updated last week
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆29Updated 2 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆70Updated this week
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆93Updated 6 months ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆76Updated last month
• dbeisser / Natrix2
  Open-source bioinformatics pipeline for the preprocessing of raw amplicon sequencing / metabarcoding data.
  ☆12Updated 3 months ago
• ctmrbio / stag-mwc
  StaG Metagenomic Workflow Collaboration
  ☆29Updated 7 months ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆47Updated 3 years ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆46Updated 2 months ago
• EBI-Metagenomics / mobilome-annotation-pipeline
  ☆41Updated this week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆59Updated last month
• amkozlov / sativa
  Semi-Automatic Taxonomy Improvement and Validation Algorithm
  ☆18Updated last year
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆55Updated 3 weeks ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆58Updated last month
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆14Updated 2 months ago
• nf-core / hgtseq
  A pipeline to investigate horizontal gene transfer from NGS data
  ☆25Updated 2 months ago
• metashot / awemags
  aweMAGs: a fully automated workflow for eukariotic MAGs
  ☆12Updated last year
• jodyphelan / tbdb
  Standard database for the TBProfiler tool
  ☆29Updated 3 weeks ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆56Updated last month
• epi2me-labs / wf-16s
  ☆29Updated 3 months ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• cmkobel / CompareM2
  🦠📇 Microbial genomes-to-report pipeline
  ☆56Updated 3 weeks ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆78Updated last year
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆53Updated last year
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆41Updated 11 months ago
• boulund / phaster_scripts
  Small utility script to submit genomes to PHASTER for phage detection
  ☆24Updated 3 years ago
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• kelwyres / Bactabolize
  ☆38Updated 3 months ago
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆101Updated this week