nf-core / metatdenovoLinks
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
☆33Updated last week
Alternatives and similar repositories for metatdenovo
Users that are interested in metatdenovo are comparing it to the libraries listed below
Sorting:
- (Meta-)genome screening for functional and natural product gene sequences☆92Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 3 months ago
- Simple bacterial assembly and annotation pipeline☆75Updated this week
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆113Updated last week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆162Updated last week
- Bifrost graph gene caller.☆96Updated 11 months ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆151Updated this week
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- ☆84Updated last year
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆59Updated 5 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆112Updated 3 months ago
- Graph-based assembly phasing☆88Updated 4 months ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- IS mapping software☆56Updated 3 years ago
- Precise host read removal☆102Updated 2 months ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆141Updated last month
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated 4 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆16Updated 2 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆102Updated 4 months ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆87Updated last year
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 5 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆104Updated 5 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 3 weeks ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Updated 3 months ago