Proteomics label-free quantification (LFQ) analysis pipeline
☆37Jan 13, 2025Updated last year
Alternatives and similar repositories for proteomicslfq
Users that are interested in proteomicslfq are comparing it to the libraries listed below
Sorting:
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆44Feb 17, 2026Updated last week
- Builds a PEP from SRA or GEO accessions☆55Jan 22, 2026Updated last month
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 3 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆24Updated this week
- Interactive tool for Phosphoproteomics☆13May 6, 2020Updated 5 years ago
- nf-test utility functions☆12Feb 13, 2026Updated 2 weeks ago
- Verify that a local file is identical to an object on Amazon S3, without having to download the object.☆12Sep 6, 2024Updated last year
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆313Updated this week
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Updated this week
- OpenCPU Demo Application☆18Jul 2, 2020Updated 5 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- Build contrasts for models defined with formulaic☆12Updated this week
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Dec 1, 2025Updated 2 months ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated last month
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated last month
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated 9 months ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Updated this week
- ☆15Oct 7, 2025Updated 4 months ago
- Three-Dimensional Vector Operations in R☆17Mar 11, 2024Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆38May 6, 2024Updated last year
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated 10 months ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- A GitHub action to install Nextflow☆26Updated this week
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆402Updated this week
- ☆17Dec 15, 2017Updated 8 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆187Feb 12, 2026Updated 2 weeks ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated last month