Proteomics label-free quantification (LFQ) analysis pipeline
☆38Jan 13, 2025Updated last year
Alternatives and similar repositories for proteomicslfq
Users that are interested in proteomicslfq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Builds a PEP from SRA or GEO accessions☆55Apr 12, 2026Updated 5 months ago
- Nascent Transcription Processing Pipeline☆25Sep 1, 2026Updated 2 weeks ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆51Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Verify that a local file is identical to an object on Amazon S3, without having to download the object.☆12Sep 6, 2024Updated 2 years ago
- nf-test utility functions☆13Updated this week
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 5 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Sep 9, 2026Updated last week
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Sep 11, 2026Updated last week
- Build contrasts for models defined with formulaic☆13Updated this week
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆356Updated this week
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated last month
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 6 years ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆15Jun 25, 2026Updated 2 months ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- k-mer similarity analysis pipeline☆24Sep 1, 2026Updated 2 weeks ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Interactive tool for Phosphoproteomics☆14May 6, 2020Updated 6 years ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆11Mar 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆20Aug 31, 2026Updated 2 weeks ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last week
- Customer workshop materials☆19May 13, 2026Updated 4 months ago
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 9 months ago
- ☆17Sep 13, 2024Updated 2 years ago
- Code and files for the main nf-core website.☆98Updated this week
- Dirichlet-Multinomial Bayesian Variable Selection☆14Jun 13, 2024Updated 2 years ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆19Jul 28, 2026Updated last month
- Fast array utilities☆15Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆20Updated this week
- Three-Dimensional Vector Operations in R☆17Mar 11, 2024Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆198Updated this week
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41May 6, 2024Updated 2 years ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 10 months ago