nf-core / proteomicslfq
Proteomics label-free quantification (LFQ) analysis pipeline
☆33Updated last month
Alternatives and similar repositories for proteomicslfq:
Users that are interested in proteomicslfq are comparing it to the libraries listed below
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆17Updated last month
- ☆19Updated 2 years ago
- A guide to running MaxQuant in Linux☆32Updated 5 years ago
- Builds a PEP from SRA or GEO accessions☆46Updated 5 months ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12Updated 5 years ago
- R package for analysing proteomics data☆49Updated last year
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- Bioconductor package that makes BIG data pint-sized.☆20Updated last year
- interactive plots for differential expression analysis☆29Updated last week
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 9 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 3 years ago
- Quick access to gene synonyms☆26Updated last week
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆32Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated 2 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ☆30Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated last month
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆51Updated 2 weeks ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated this week
- ☆26Updated last year
- Calculate and plot distributions of genomic ranges☆26Updated 9 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago