nextstrain / fauna
RethinkDB database to support real-time virus analysis
☆33Updated this week
Related projects ⓘ
Alternatives and complementary repositories for fauna
- ☆35Updated last year
- Histosketching Using Little Kmers☆55Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆32Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- Phylogenetic tree viewer based on D3.js☆56Updated 2 months ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆117Updated 9 months ago
- de novo virus assembler of Illumina paired reads☆54Updated 3 years ago
- Visualization of the pan-genome output by panX☆62Updated last year
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆29Updated last week
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- Collection template and associated materials for SARS-CoV-2 metadata☆34Updated last year
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆32Updated last week
- Read Assembly and Annotation Pipeline Tool☆55Updated last month
- Sequence analysis and data visualization tool☆8Updated 6 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 5 years ago
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆43Updated 10 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆47Updated 6 months ago
- Build sourmash databases for genbank.☆12Updated last year
- Bioinformatics Pipeline and Visualization resources☆54Updated 2 months ago
- Local Lineage and Monophyly Assessment☆16Updated 3 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆46Updated this week
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆91Updated this week
- Nextstrain build for avian influenza viruses☆19Updated this week
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆16Updated this week
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- interactive phylogenetic tree viewer☆11Updated 4 months ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆79Updated 2 months ago
- Command line interface and Python client library for the One Codex API☆23Updated 3 weeks ago