nextstrain / faunaLinks
RethinkDB database to support real-time virus analysis
☆34Updated last week
Alternatives and similar repositories for fauna
Users that are interested in fauna are comparing it to the libraries listed below
Sorting:
- A collection of bioinformatics file format specimens to test against☆47Updated 5 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Updated 13 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- ☆37Updated 4 months ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 months ago
- Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML☆16Updated 6 months ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆119Updated last year
- Python CLI for alignment-free genomics.☆12Updated last month
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- SVG based genome viewer written in javascript using D3☆33Updated 10 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Phylogenetic tree viewer based on D3.js☆57Updated last year
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- List of computational resources for analyzing microbial sequencing data.☆68Updated 2 months ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated last week
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆68Updated 2 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- Bioinformatics Open Source Sequence machine☆33Updated 2 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36Updated 3 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- ☆14Updated 6 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 9 months ago
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- just annotate it, dammit!☆93Updated 2 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆72Updated last year