nextstrain / augurLinks
Pipeline components for real-time phylodynamic analysis
☆275Updated this week
Alternatives and similar repositories for augur
Users that are interested in augur are comparing it to the libraries listed below
Sorting:
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆250Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆534Updated last week
- An analysis and visualization platform for 'omics data☆489Updated last week
- Ultra-deep search for novel viruses☆275Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆249Updated 3 weeks ago
- Web app for visualizing pathogen evolution☆304Updated this week
- Syntax highlighting for computational biology☆271Updated 2 years ago
- HyPhy: Hypothesis testing using Phylogenies☆247Updated this week
- Infectious Disease Sequencing Platform☆89Updated 3 weeks ago
- Tool Shed repositories maintained by the Intergalactic Utilities Commission☆185Updated this week
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆350Updated 2 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆400Updated last month
- Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the…☆260Updated 3 weeks ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆193Updated 4 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 6 months ago
- Python package with helper tools for the nf-core community.☆285Updated 3 weeks ago
- NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.☆495Updated this week
- Fast genome analysis from unassembled short reads☆305Updated last year
- Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures☆128Updated 2 years ago
- Galaxy Community Hub☆122Updated this week
- Genome annotation with AUGUSTUS☆322Updated 4 months ago
- [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …☆195Updated last year
- Nanopore sequence read simulator☆288Updated 10 months ago
- A Python package for exploring and analysing genetic variation data☆307Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆493Updated 3 weeks ago
- Assemble large genomes using short reads☆329Updated 9 months ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆129Updated last month
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆343Updated last month
- Utilities for building and managing bioconda recipes☆103Updated this week
- This is the development home of the Snakemake wrapper repository, see☆238Updated last week