Alternatives and similar repositories for phyloTree:

Users that are interested in phyloTree are comparing it to the libraries listed below

• iqbal-lab-org / clockwork
  CRyPTIC data processing pipelines
  ☆32Updated 7 months ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆28Updated last month
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆58Updated 6 months ago
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆35Updated this week
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆72Updated 3 months ago
• pha4ge / pipeline-resources
  Bioinformatics Pipeline and Visualization resources
  ☆55Updated 6 months ago
• ncbi / rapt
  Read Assembly and Annotation Pipeline Tool
  ☆57Updated 5 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 11 months ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• rrwick / Fast5-to-Fastq
  A simple tool for extracting reads from Oxford Nanopore fast5 files
  ☆26Updated 7 years ago
• lh3 / jstreeview
  Interactive phylogenetic tree viewer/editor
  ☆46Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆82Updated 2 years ago
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆19Updated 10 months ago
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆55Updated 3 years ago
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 3 months ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 3 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆65Updated last year
• achtman-lab / GrapeTree
  GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…
  ☆81Updated 2 months ago
• NCBI-Hackathons / NovoGraph
  NovoGraph: building whole genome graphs from long-read-based de novo assemblies
  ☆45Updated 4 years ago
• rcs333 / VAPiD
  VAPiD: Viral Annotation and Identification Pipeline
  ☆51Updated 9 months ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆73Updated last year
• schultzm / entrez_direct_tut
  Tutorial on using E-utilities
  ☆22Updated 3 months ago
• GTB-tbsequencing / mutation-catalogue-2023
  ☆17Updated 8 months ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆62Updated 2 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆30Updated last year
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆58Updated last month
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆40Updated 2 weeks ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆43Updated 4 years ago
• DMU-lilab / pTrimmer
  Used to trim off the primer sequence from mutiplex amplicon sequencing
  ☆21Updated last year