yuzhang123 / IDEASLinks
☆10Updated 8 years ago
Alternatives and similar repositories for IDEAS
Users that are interested in IDEAS are comparing it to the libraries listed below
Sorting:
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- Fast fusion detection using kallisto☆79Updated 6 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated last month
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- ☆16Updated 2 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Updated 4 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago