Alternatives and similar repositories for IDEAS

Users that are interested in IDEAS are comparing it to the libraries listed below

• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated last year
• ratschlab / mmr
  A tool for Read Multi-Mapper Resolution
  ☆24Updated 8 years ago
• CollasLab / edd
  Enriched Domain Detector for ChIP-seq data
  ☆16Updated 3 years ago
• simonvh / fluff
  Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…
  ☆71Updated last year
• biocore-ntnu / epic
  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
  ☆31Updated 7 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 9 years ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 9 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆30Updated 4 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆55Updated 5 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 8 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 2 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• Illumina / happyR
  R tools to interact with hap.py output
  ☆16Updated 6 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆22Updated 4 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 6 years ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆43Updated 4 years ago
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆79Updated 8 months ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated this week
• andrej-fischer / cloneHD
  High-definition reconstruction of clonal composition from next-generation sequencing data
  ☆42Updated 9 years ago
• pachterlab / sleuth_paper_analysis
  Code to reproduce analyses from the sleuth paper
  ☆16Updated 7 years ago
• kimpenn / VERSE
  A versatile and efficient RNA-Seq read counting tool
  ☆16Updated 9 years ago
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆30Updated 5 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• jernst98 / ChromImpute
  ☆16Updated 2 years ago