☆10Dec 12, 2017Updated 8 years ago
Alternatives and similar repositories for IDEAS
Users that are interested in IDEAS are comparing it to the libraries listed below
Sorting:
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- Static website generator for sciencey people☆30Feb 7, 2024Updated 2 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Introduction to data driven life sciences☆21Jul 7, 2025Updated 7 months ago
- TFFM framework☆13Sep 22, 2025Updated 5 months ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 4 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated last year
- A small collection of useful tutorials and links☆15Apr 13, 2024Updated last year
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- Enriched Domain Detector for ChIP-seq data☆16Aug 17, 2022Updated 3 years ago
- Docker for Bioinformatics☆20Feb 18, 2026Updated 2 weeks ago
- ☆40Sep 14, 2016Updated 9 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Cracking the Enigma Code☆29Sep 19, 2017Updated 8 years ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- a set of NGS pipelines☆24Feb 19, 2026Updated last week
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Aug 17, 2016Updated 9 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Feb 14, 2022Updated 4 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Nov 19, 2024Updated last year
- Common improvements for your Python projects☆26Jul 3, 2016Updated 9 years ago
- Build and Deliver Software with Containers☆32Oct 2, 2020Updated 5 years ago
- IDR☆175Sep 18, 2018Updated 7 years ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 7 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated last month
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Aug 25, 2020Updated 5 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 4 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Jul 18, 2019Updated 6 years ago