trvrb / sismidLinks
Pathogen evolution, selection and immunity
☆45Updated last year
Alternatives and similar repositories for sismid
Users that are interested in sismid are comparing it to the libraries listed below
Sorting:
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 3 months ago
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated 11 months ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆29Updated 4 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆59Updated 6 years ago
- Conditional Auto-Regressive LASSO in R☆20Updated 2 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last week
- babette is an R package to work with BEAST2☆46Updated last week
- PhyDyn: Epidemiological modelling in BEAST☆21Updated 2 years ago
- Phylogenetic inference using Stan☆23Updated 5 months ago
- ☆18Updated 3 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Computes affinity between two entities based on their co-occurrence☆27Updated 2 months ago
- Calculate distances between phylogenetic trees in R☆33Updated this week
- Tools for evolutionary forecasting☆13Updated last month
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆30Updated 4 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆25Updated last month
- K-mer Counting for Biological Sequence Analysis☆27Updated 6 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Updated 3 years ago
- ☆11Updated 3 months ago
- Estimating time trees from very large phylogenies☆27Updated last year
- Analysis with Profile Hidden Markov Models☆22Updated last year
- An interactive web application for demonstrating and using phyloseq.☆60Updated 6 years ago
- A textbook for phylogenetic comparative methods.☆44Updated 5 years ago
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Tutorial on Bayesian phylogenetic analysis☆47Updated 7 years ago