Alternatives and similar repositories for auspice

Users that are interested in auspice are comparing it to the libraries listed below

• nextstrain / nextstrain.org
  The Nextstrain website
  ☆96Updated this week
• nextstrain / augur
  Pipeline components for real-time phylodynamic analysis
  ☆275Updated this week
• galaxyproject / SARS-CoV-2
  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
  ☆127Updated 3 years ago
• CDCgov / SARS-CoV-2_Sequencing
  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
  ☆349Updated 2 years ago
• nextstrain / nextclade
  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
  ☆250Updated 2 weeks ago
• chanzuckerberg / czid-web
  Infectious Disease Sequencing Platform
  ☆90Updated this week
• ababaian / serratus
  Ultra-deep search for novel viruses
  ☆275Updated 2 years ago
• virtual-biohackathons / covid-19-bh20
  COVID-19 Biohackathon April 5-11 2020
  ☆239Updated 5 years ago
• bionode / bionode
  Modular and universal bioinformatics
  ☆313Updated 6 years ago
• cov-lineages / pangolin
  Software package for assigning SARS-CoV-2 genome sequences to global lineages.
  ☆446Updated 3 weeks ago
• higlass / higlass
  Fast, flexible and extensible genome browser.
  ☆339Updated this week
• blab / nextflu
  Real-time tracking of influenza evolution
  ☆88Updated 2 years ago
• CDCgov / MicrobeTrace
  The Visualization Multitool for Molecular Epidemiology and Bioinformatics
  ☆97Updated this week
• veg / phylotree.js
  Interactive viewer of phylogenetic trees
  ☆194Updated last week
• stephaneguindon / phyml
  PhyML -- Phylogenetic estimation using (Maximum) Likelihood
  ☆195Updated 5 months ago
• biojs / biojs
  🔬A library of JavaScript components to represent biological data
  ☆505Updated 4 years ago
• ncbi / blast_plus_docs
  ☆119Updated 3 years ago
• pha4ge / sars-cov-2-contextual-data-specification
  Collection template and associated materials for SARS-CoV-2 metadata
  ☆37Updated 2 years ago
• galaxyproject / galaxy-hub
  Galaxy Community Hub
  ☆122Updated this week
• neherlab / treetime
  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
  ☆249Updated last week
• nextstrain / fauna
  RethinkDB database to support real-time virus analysis
  ☆35Updated 3 weeks ago
• dasmoth / dalliance
  Interactive web-based genome browser.
  ☆228Updated 6 years ago
• openSNP / snpr
  The sources of the openSNP website
  ☆178Updated 9 months ago
• broadinstitute / viral-ngs
  viral-ngs: command line tools and wrappers for processing raw viral genomic data
  ☆193Updated this week
• nextstrain / ncov
  Nextstrain build for SARS-CoV-2
  ☆1,358Updated last week
• biowasm / biowasm
  WebAssembly modules for genomics
  ☆262Updated 2 weeks ago
• GMOD / Apollo
  Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
  ☆138Updated 7 months ago
• hammerlab / pileup.js
  Interactive in-browser track viewer
  ☆280Updated 4 years ago
• vgteam / sequenceTubeMap
  displays multiple genomic sequences in the form of a tube map
  ☆216Updated 2 months ago
• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆274Updated this week