nextstrain / auspiceLinks
Web app for visualizing pathogen evolution
☆302Updated this week
Alternatives and similar repositories for auspice
Users that are interested in auspice are comparing it to the libraries listed below
Sorting:
- Pipeline components for real-time phylodynamic analysis☆271Updated this week
- The Nextstrain website☆96Updated this week
- Infectious Disease Sequencing Platform☆86Updated last week
- Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures☆128Updated 2 years ago
- Nextstrain build for SARS-CoV-2☆1,353Updated this week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆236Updated last week
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆348Updated 2 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆185Updated 2 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆242Updated 2 weeks ago
- RethinkDB database to support real-time virus analysis☆34Updated 2 weeks ago
- Interactive viewer of phylogenetic trees☆181Updated 5 months ago
- Real-time tracking of influenza evolution☆88Updated last year
- Viral genomics analysis pipelines☆195Updated 9 months ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆170Updated 2 years ago
- Interactive in-browser track viewer☆279Updated 3 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 2 years ago
- Modular and universal bioinformatics☆313Updated 5 years ago
- ☆114Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆509Updated this week
- Source code for JBrowse 2, a modern React-based genome browser☆242Updated this week
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆216Updated last week
- Ultrafast Sample Placement on Existing Trees☆128Updated this week
- A genome browser designed for complex structural variants and long reads.☆283Updated 3 weeks ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆51Updated last week
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆286Updated 2 years ago
- DNA plotting library for Python☆295Updated last year
- The Visualization Multitool for Molecular Epidemiology and Bioinformatics☆94Updated this week
- DNA Plasmid Visualization Component using AngularJS☆135Updated 8 years ago
- a toolkit for working with Oxford nanopore data☆243Updated 2 years ago
- The core Mesquite repository☆102Updated this week