Web app for visualizing pathogen evolution
☆312Aug 23, 2026Updated last week
Alternatives and similar repositories for auspice
Users that are interested in auspice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline components for real-time phylodynamic analysis☆277Updated this week
- Nextstrain build for SARS-CoV-2☆1,363Aug 17, 2026Updated last week
- The Nextstrain website☆96Updated this week
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- RethinkDB database to support real-time virus analysis☆36Aug 20, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Aug 5, 2026Updated 3 weeks ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆261Aug 19, 2026Updated last week
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆63Updated this week
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆255Updated this week
- Nextstrain build for avian influenza viruses☆29Aug 3, 2026Updated 3 weeks ago
- Nextstrain build for Zika virus☆11Aug 3, 2026Updated 3 weeks ago
- Real-time tracking of influenza evolution☆91Sep 8, 2023Updated 2 years ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- ☆11Aug 18, 2024Updated 2 years ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆455Aug 17, 2026Updated last week
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated 2 months ago
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated last month
- Interactive viewer of phylogenetic trees☆200Jun 28, 2026Updated 2 months ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Multiple Genome Viewer☆12Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- Nextstrain build for mpox virus☆50Updated this week
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆111Updated this week
- ☆16Oct 29, 2025Updated 10 months ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆128Updated this week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Updated this week
- ☆45Feb 13, 2026Updated 6 months ago
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆13Oct 5, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 7 months ago
- Phylodynamic estimation of nCoV incidence and prevalence☆19Feb 14, 2020Updated 6 years ago
- ☆25Jun 25, 2024Updated 2 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated last month
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated 11 months ago
- Data and scripts for Zika virus tutorial☆10Jul 21, 2026Updated last month