data61 / gossamerLinks
Gossamer bioinformatics suite
☆22Updated 7 months ago
Alternatives and similar repositories for gossamer
Users that are interested in gossamer are comparing it to the libraries listed below
Sorting:
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆69Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆107Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 8 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- ☆41Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Battenberg R package for subclonal copynumber estimation☆88Updated last week
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆73Updated 10 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- ☆74Updated 2 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆72Updated 3 years ago
- ☆30Updated 6 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- ☆116Updated last year
- ☆21Updated this week
- Software program for checking sample matching for NGS data☆134Updated last year
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- ☆44Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆149Updated 10 months ago