Alternatives and similar repositories for DSS:

Users that are interested in DSS are comparing it to the libraries listed below

• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 3 years ago
• Xinglab / rMATS-long
  ☆28Updated 3 months ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated last week
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆17Updated 7 months ago
• js2264 / VplotR
  R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
  ☆11Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 2 weeks ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆17Updated last month
• ZhouQiangwei / MethHaplo
  allele specific DNA methylation haplotype region
  ☆13Updated last year
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 5 months ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 2 months ago
• chrisamiller / copyCat
  a parallel R package for detecting copy-number alterations from short sequencing reads
  ☆23Updated 3 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆39Updated this week
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 5 months ago
• huishenlab / biscuit
  BISulfite-seq CUI Toolkit
  ☆19Updated 3 months ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆27Updated last week
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated 2 weeks ago
• SdeBlank / NanoFG
  Third-generation fusion gene detection
  ☆14Updated last year
• wupengomics / scBS-map
  Single-cell Bisulfite Sequencing Data Mapping
  ☆12Updated 3 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆18Updated 4 years ago