CpGPT: a Foundation Model for DNA Methylation.
☆68Dec 28, 2025Updated 2 months ago
Alternatives and similar repositories for CpGPT
Users that are interested in CpGPT are comparing it to the libraries listed below
Sorting:
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆54Mar 5, 2026Updated 2 weeks ago
- ☆10Aug 17, 2022Updated 3 years ago
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆33Jun 22, 2025Updated 8 months ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- A Python-based compendium of GPU-optimized aging clocks.☆122Feb 18, 2026Updated last month
- ☆14May 23, 2025Updated 9 months ago
- Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics☆13Aug 7, 2020Updated 5 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆17Dec 16, 2025Updated 3 months ago
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆29Aug 11, 2025Updated 7 months ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆18Feb 23, 2026Updated 3 weeks ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆24Mar 22, 2022Updated 3 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 6 months ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 5 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- Data files of promoter and non-promoter sequences used to build CNN models☆13Dec 24, 2016Updated 9 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- ☆54Mar 9, 2022Updated 4 years ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 7 months ago
- ☆25Feb 18, 2021Updated 5 years ago
- ☆23Sep 9, 2025Updated 6 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 3 months ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- CpG Transformer for imputation of single-cell methylomes☆36Sep 14, 2023Updated 2 years ago
- ☆16Feb 15, 2026Updated last month
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- Tools and Data related to Enzymatic Methylation Sequencing☆32Jan 25, 2026Updated last month
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆14Oct 21, 2025Updated 4 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆16Jan 21, 2022Updated 4 years ago
- ☆14Aug 14, 2023Updated 2 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 5 years ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆17Mar 3, 2025Updated last year
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- ☆51Jan 4, 2023Updated 3 years ago
- JanusDNA☆26Mar 2, 2026Updated 2 weeks ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Mar 14, 2026Updated last week
- ☆47Feb 11, 2026Updated last month
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago