CpGPT: a Foundation Model for DNA Methylation.
☆79Aug 19, 2026Updated last week
Alternatives and similar repositories for CpGPT
Users that are interested in CpGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python-based compendium of GPU-optimized aging clocks.☆129Updated this week
- Data and papers related to epigenetic clocks predicting age☆41Jun 6, 2026Updated 2 months ago
- ☆17Jan 30, 2026Updated 7 months ago
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆46Mar 12, 2025Updated last year
- ☆16Jun 27, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆29Dec 15, 2025Updated 8 months ago
- ☆56Jan 4, 2023Updated 3 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆25Mar 22, 2022Updated 4 years ago
- ☆18Apr 23, 2026Updated 4 months ago
- ☆11Aug 17, 2022Updated 4 years ago
- Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.11…☆17Jan 24, 2026Updated 7 months ago
- Python-based preprocessing software for Illumina methylation arrays☆43Aug 17, 2023Updated 3 years ago
- This repository houses scripts for training genetic scores of omic traits in INTERVAL☆29May 31, 2023Updated 3 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DNA methylation studies of mammalian species☆46Jan 21, 2026Updated 7 months ago
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆34Jun 22, 2025Updated last year
- Scripts for analyses in the Griffin manuscript☆13Dec 14, 2022Updated 3 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- ☆22Aug 13, 2026Updated 2 weeks ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆31Jul 27, 2023Updated 3 years ago
- ☆42May 27, 2025Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- Workflow for preprocessing cfDNA samples.☆12Nov 11, 2024Updated last year
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Jul 28, 2026Updated last month
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆49Aug 23, 2025Updated last year
- Orchestrating Hi-C analysis with Bioconductor☆11Jul 11, 2025Updated last year
- ☆17May 25, 2026Updated 3 months ago
- Foundation Models for Genomics & Transcriptomics☆915Feb 24, 2026Updated 6 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆196Apr 19, 2026Updated 4 months ago
- ☆19Feb 15, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆13Jan 18, 2017Updated 9 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- ☆14Jul 22, 2025Updated last year
- Bird’s Eye: Probing for Linguistic Graph Structureswith a Simple Information-Theoretic Approach☆11Aug 1, 2021Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- GenBio AI is building an AI-Driven Digital Organism (AIDO) for predicting, simulating and programming biology at all levels.☆200Aug 24, 2026Updated last week
- TFFM framework☆13Sep 22, 2025Updated 11 months ago