Python OncoPrint library based on Matplotlib
☆25Sep 23, 2025Updated 5 months ago
Alternatives and similar repositories for pyoncoprint
Users that are interested in pyoncoprint are comparing it to the libraries listed below
Sorting:
- ☆13Feb 11, 2026Updated 3 weeks ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- ClusterScan, search for clusters of features in a given annotation.☆11Aug 26, 2021Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 9 months ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- ☆13Apr 2, 2025Updated 11 months ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated 9 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Updated this week
- A software tool for personalized and allele-specific CRISPR editing.☆18Feb 1, 2022Updated 4 years ago
- ☆14May 12, 2023Updated 2 years ago
- simple django app for blast search☆18Feb 3, 2026Updated last month
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆19Oct 18, 2019Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 7 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Feb 15, 2026Updated 2 weeks ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Dec 14, 2021Updated 4 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Updated this week
- An Expectation-Maximization algorithm to infer mutational signatures☆26Nov 16, 2016Updated 9 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 3 months ago
- ☆28Sep 11, 2025Updated 5 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆56Nov 27, 2024Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆67Updated this week
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆75Feb 19, 2026Updated last week
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- A General Framework for Consensus Partitioning☆65Jan 30, 2026Updated last month
- Lollipop-style mutation diagrams for annotating genetic variations.☆196Sep 20, 2024Updated last year
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆26Mar 14, 2025Updated 11 months ago
- scRNA-seq data visualization from scrattch☆29Aug 20, 2025Updated 6 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated last month
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year