Alternatives and similar repositories for pyoncoprint:

Users that are interested in pyoncoprint are comparing it to the libraries listed below

• UMCUGenetics / CHORD
  An R package for predicting HR deficiency from mutation contexts
  ☆28Updated last week
• friedue / Notes
  Personal notes about work- and coding-related topics
  ☆20Updated last year
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆26Updated 4 months ago
• AstraZeneca-NGS / disambiguate
  Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
  ☆30Updated 6 years ago
• aeeckhou / shallowHRD
  This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …
  ☆33Updated 7 months ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆24Updated 8 months ago
• TheJacksonLaboratory / JAXBD2K-ShortCourse
  This repository contains course materials from JAX-BD2K workshop.
  ☆31Updated 5 years ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆80Updated this week
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆35Updated 6 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated last year
• broadinstitute / RNA_MUTECT_1.0-1
  ☆37Updated 4 years ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆73Updated this week
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆44Updated this week
• Bioconductor / copy-number-analysis
  Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
  ☆21Updated last year
• bioinformatics-core-shared-training / CRUK_CI_RNAseq_course
  Base CRUK Cambridge Institute RNAseq Course
  ☆21Updated 5 years ago
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆91Updated 6 months ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆35Updated 2 months ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 4 years ago
• AlexandrovLab / SigProfilerSingleSample
  SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…
  ☆23Updated last month
• nghiavtr / FuSeq
  ☆33Updated 2 years ago
• cancer-genomics / delfi_scripts
  ☆72Updated 3 years ago
• getzlab / MutSig2CV
  MutSig2CV from Lawrence et al. 2014
  ☆31Updated 4 years ago
• AlexandrovLab / SigProfilerAssignment
  Assignment of known mutational signatures to individual samples and individual somatic mutations
  ☆50Updated last week
• openvax / isovar
  Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
  ☆25Updated 4 months ago
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆42Updated last year
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆31Updated 6 months ago
• AlexandrovLab / SigProfilerPlotting
  SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…
  ☆47Updated last week
• gagneurlab / absplice
  ☆34Updated 5 months ago