Nextflow pipeline to convert VCF files into MAF files.
☆10Dec 12, 2025Updated 10 months ago
Alternatives and similar repositories for vcftomaf
Users that are interested in vcftomaf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Converts bam or cram files to fastq format and does quality control.☆32Updated this week
- Deep neural network learning to transform point clouds to their corresponding mesh☆27Feb 28, 2023Updated 3 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆35Oct 7, 2026Updated last week
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated 4 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 4 years ago
- A pipeline creation tool using Snakemake☆14Oct 7, 2026Updated last week
- Python for UK Biobank data analysis☆10Dec 3, 2024Updated last year
- Performs BLAST on compressed proteomic data.☆18Jun 15, 2015Updated 11 years ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 10 months ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Oct 1, 2026Updated 2 weeks ago
- ☆15Apr 20, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Updated this week
- ☆10Sep 14, 2023Updated 3 years ago
- Call and score variants from WGS/WES of rare disease patients.☆126Updated this week
- ☆13Oct 7, 2026Updated last week
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- Data cleaning and exploration in Pandas via Jupyter notebook☆10Jun 17, 2019Updated 7 years ago
- ☆27Sep 17, 2026Updated 3 weeks ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Experimentation with learning cross-modal mappings (video to audio) as an approach to music generation☆15May 2, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Plot categorical heatmaps with seaborn☆17Aug 30, 2022Updated 4 years ago
- Template folder structure for a research project☆24Jul 23, 2024Updated 2 years ago
- Cellsnake tool main repo☆35Feb 22, 2024Updated 2 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- GA4HPC is a user-facing, terminal-based tool that generates an energy usage and carbon footprint report for your computational workloads.☆74Aug 7, 2026Updated 2 months ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated 6 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆614Updated this week
- One Player Dungeon Crawler in Unity (speed run 2D game)☆17Feb 8, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated 2 months ago
- Command line tool for Wave containers provisioning service☆19Oct 7, 2026Updated last week
- Model files for Sentieon variant callers☆17Oct 2, 2026Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated last month
- Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for pre…☆16Oct 7, 2026Updated last week
- Welcome to the AWS Community Builders Dashboard repository!☆17Aug 11, 2026Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago