nbrg-ppcu / prokbertLinks
☆18Updated 2 weeks ago
Alternatives and similar repositories for prokbert
Users that are interested in prokbert are comparing it to the libraries listed below
Sorting:
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 6 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- antimicrobial peptide prediction in R☆33Updated 9 months ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- ☆26Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 weeks ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- ☆74Updated 11 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆86Updated 2 months ago
- From metagenomes to epitopes and beyond☆12Updated 2 weeks ago
- metabolic heatmap☆21Updated 6 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆149Updated 3 weeks ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- gutSMASH☆55Updated last week
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- GCN classifier for phage taxanomy classification☆31Updated 11 months ago
- PaperBLAST: find papers about a protein or its homologs☆46Updated 3 weeks ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆35Updated 5 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last month
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Updated 2 years ago
- Associated code for EvoWeaver publication☆15Updated 4 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 6 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- sensitive and precise assembly of short sequencing reads☆161Updated last year