Alternatives and similar repositories for prokbert:

Users that are interested in prokbert are comparing it to the libraries listed below

• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆23Updated this week
• wilkelab / Opfi
  A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
  ☆21Updated 3 years ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆41Updated 3 weeks ago
• gamcil / synthaser
  Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases
  ☆21Updated 2 years ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆18Updated 2 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆23Updated last year
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆30Updated 3 weeks ago
• cdanielmachado / cooccurrence
  Supplementary data for co-occurrence manuscript
  ☆10Updated 5 years ago
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆18Updated last year
• borenstein-lab / microbiome-metabolome-curated-data
  ☆61Updated 3 months ago
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆46Updated last week
• KennthShang / PhaGCN
  GCN classifier for phage taxanomy classification
  ☆30Updated 2 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆32Updated 4 months ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 3 months ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆38Updated last month
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆18Updated 8 months ago
• burstein-lab / genomic-nlp
  ☆23Updated 5 months ago
• NicolaDM / phastSim
  fast sequence evolution simulation for SARS-CoV-2 and similar
  ☆17Updated this week
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆20Updated 2 months ago
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆27Updated last month
• gamcil / clustermap.js
  ☆30Updated 3 years ago
• nafizh / NeuBI
  Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.
  ☆17Updated last year
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆128Updated this week
• Merck / bgc-pipeline
  ☆11Updated last month
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated 2 weeks ago
• rotheconrad / KEGGDecoder-binder
  metabolic heatmap
  ☆19Updated 5 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆30Updated 2 years ago