nbrg-ppcu / prokbert
☆14Updated 2 weeks ago
Alternatives and similar repositories for prokbert:
Users that are interested in prokbert are comparing it to the libraries listed below
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated this week
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆45Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- Metagenome analysis using the Kraken software suite☆30Updated 2 years ago
- ☆24Updated 6 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆18Updated last month
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 3 weeks ago
- ☆24Updated last year
- GCN classifier for phage taxanomy classification☆31Updated 4 months ago
- metabolic heatmap☆19Updated 5 years ago
- Viral protein family functional prediction using protein language models☆18Updated 9 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 3 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 4 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆52Updated 3 weeks ago
- ☆10Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 2 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- antimicrobial peptide prediction in R☆28Updated 2 months ago
- Protein Sequence Annotation with Language Models☆19Updated 4 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆34Updated 6 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆46Updated last month
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆18Updated 2 weeks ago
- ☆31Updated 3 years ago
- UniProt Id Mapping through API☆31Updated 5 months ago
- From metagenomes to epitopes and beyond☆11Updated last month
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated this week