Software for predicting translation initiation rates in bacteria
☆33Jul 30, 2025Updated 9 months ago
Alternatives and similar repositories for ostir
Users that are interested in ostir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆53Jun 19, 2023Updated 2 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- ☆16Sep 8, 2021Updated 4 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.☆17Apr 7, 2026Updated last month
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Jul 25, 2016Updated 9 years ago
- A PCR primer tool for DNA assembly flows☆33Apr 24, 2024Updated 2 years ago
- ☆26Apr 2, 2026Updated last month
- ☆14Mar 12, 2026Updated 2 months ago
- ☆12Apr 21, 2016Updated 10 years ago
- ☆18Sep 9, 2025Updated 8 months ago
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆16Mar 17, 2023Updated 3 years ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆27Jan 25, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GAME was designed for the functional genomics community to create seamless communication across pre-trained models and genomics datasets.…☆19May 6, 2026Updated 2 weeks ago
- Online tool for comparing prices and feasibility of DNA synthesis☆22Mar 2, 2023Updated 3 years ago
- Codon usage tables in code-friendly format + Python bindings☆43May 9, 2025Updated last year
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆60Oct 27, 2015Updated 10 years ago
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆30Nov 11, 2019Updated 6 years ago
- ☆23Feb 7, 2022Updated 4 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- An Open-Source web application to plan and document cloning and genome engineering☆53Updated this week
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Jan 29, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆33Mar 3, 2024Updated 2 years ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15May 29, 2025Updated 11 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Pairwise machine learning models for phage-host interaction prediction☆21Jun 23, 2024Updated last year
- simple and not slow ORF caller☆23Apr 7, 2026Updated last month
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- Webserver and command line tool for annotating engineered plasmids☆17Updated this week
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 5 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆35Jun 1, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- ☆13Dec 26, 2025Updated 4 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 2 weeks ago
- ☆13Sep 4, 2017Updated 8 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆18Nov 6, 2024Updated last year
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago