Fast and flexible ORF finder
☆84Jan 17, 2022Updated 4 years ago
Alternatives and similar repositories for orfipy
Users that are interested in orfipy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ORFFinder in Python☆14Aug 24, 2024Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆44Sep 30, 2026Updated last month
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆28Oct 6, 2023Updated 3 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 9 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆148Apr 6, 2025Updated last year
- non-reference transposable element detection using sTELLeR☆13Nov 6, 2024Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 4 months ago
- MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets☆33May 20, 2022Updated 4 years ago
- Virus Identification☆30May 26, 2025Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 5 months ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆15Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆140Aug 29, 2024Updated 2 years ago
- Predict AMPs in (meta)genomes and peptides☆98Jul 19, 2026Updated 3 months ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆57Mar 2, 2026Updated 8 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 3 months ago
- antimicrobial peptide prediction in R☆35Dec 17, 2024Updated last year
- ☆20Mar 31, 2021Updated 5 years ago
- Pathogenfinder2☆19Apr 20, 2026Updated 6 months ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- Differential expression and allelic analysis, nonparametric statistics☆33Oct 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tiberius is a deep learning gene finder.☆145Updated this week
- Learning and Aligning Large Protein Families with support of protein language models.☆33Oct 28, 2026Updated last week
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- ☆26Aug 15, 2025Updated last year
- PAGAN2 multiple sequence aligner☆12Sep 4, 2026Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆294Jul 7, 2026Updated 3 months ago
- Python bindings for the TaxonKit library☆43Updated this week
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Oct 22, 2026Updated 2 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆283Oct 28, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆588Sep 7, 2026Updated last month
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- ☆291Dec 29, 2025Updated 10 months ago