Alternatives and similar repositories for orfipy

Users that are interested in orfipy are comparing it to the libraries listed below

• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆151Updated 2 weeks ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆132Updated 4 months ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆115Updated last year
• KatyBrown / CIAlign
  ☆131Updated last year
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆107Updated last month
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆107Updated last month
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated last month
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆113Updated 10 months ago
• broadinstitute / catch
  A package for designing compact and comprehensive capture probe sets.
  ☆89Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆127Updated last year
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆100Updated last month
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 3 months ago
• Juke34 / awesome-awesomeness-bioinformatics
  A list of awesome awesomeness related to bioinformatics and associated fields
  ☆41Updated 6 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆146Updated this week
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆62Updated last month
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated last year
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆100Updated 3 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆97Updated this week
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆76Updated 2 weeks ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆106Updated 2 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆99Updated last year
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆122Updated 4 months ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆119Updated 9 months ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆117Updated 2 months ago
• epi2me-labs / wf-basecalling
  ☆45Updated 3 weeks ago
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆93Updated 3 months ago
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆78Updated 2 years ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆51Updated 2 years ago