EnzoAndree / HmmPyLinks
A Pure-Python parser of HMMER3 output
☆17Updated 11 months ago
Alternatives and similar repositories for HmmPy
Users that are interested in HmmPy are comparing it to the libraries listed below
Sorting:
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 3 months ago
- ☆131Updated last year
- sensitive and precise assembly of short sequencing reads☆161Updated 11 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 5 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- PaperBLAST: find papers about a protein or its homologs☆45Updated 3 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆146Updated this week
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- UniProt Id Mapping through API☆35Updated 11 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆53Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆63Updated 3 weeks ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆21Updated 6 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆84Updated 4 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Find clustered hits from a BLAST search☆119Updated 9 months ago
- ☆16Updated 2 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆113Updated 10 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 5 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 2 months ago
- Fast and flexible ORF finder☆75Updated 3 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆60Updated 5 years ago
- Logan Unitigs and Contigs