EnzoAndree / HmmPyLinks
A Pure-Python parser of HMMER3 output
☆18Updated last year
Alternatives and similar repositories for HmmPy
Users that are interested in HmmPy are comparing it to the libraries listed below
Sorting:
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆95Updated 5 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- sensitive and precise assembly of short sequencing reads☆163Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 3 years ago
- ☆133Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 4 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Updated 10 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 7 months ago
- Phage Annotation using Protein Structures☆148Updated this week
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆161Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆76Updated 9 months ago
- MGnify genome analysis pipeline☆108Updated 3 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆72Updated last month
- PaperBLAST: find papers about a protein or its homologs☆51Updated 2 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆130Updated this week
- RNA secondary structure/sequence profiles for homology search and alignment☆123Updated last month
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- Find clustered hits from a BLAST search☆131Updated 3 weeks ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Updated last year
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆63Updated 5 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated last month
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆28Updated last week
- Python bindings for the TaxonKit library☆43Updated this week
- Machine-learning-based general bacterial promoter prediction tool.☆53Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 2 months ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated 2 months ago