EnzoAndree / HmmPyLinks
A Pure-Python parser of HMMER3 output
☆18Updated last year
Alternatives and similar repositories for HmmPy
Users that are interested in HmmPy are comparing it to the libraries listed below
Sorting:
- ☆132Updated last year
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆87Updated 2 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆153Updated this week
- PaperBLAST: find papers about a protein or its homologs☆46Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆22Updated 7 months ago
- sensitive and precise assembly of short sequencing reads☆161Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 7 months ago
- Discovery of conserved gene clusters in multiple genomes☆110Updated 5 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆67Updated 3 weeks ago
- RNA secondary structure/sequence profiles for homology search and alignment☆115Updated 11 months ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated last month
- Find clustered hits from a BLAST search☆123Updated last week
- Bioinformatic Tools for study Evolution of metabolic diversity☆35Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆74Updated 6 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- UniProt Id Mapping through API☆35Updated last month
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆32Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆124Updated 2 months ago
- Similarity networks of biosynthetic gene clusters☆138Updated 2 weeks ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Logan Unitigs and Contigs☆174Updated last month
- MGnify genome analysis pipeline☆108Updated 2 weeks ago