foerstner-lab / gffpandas
Parse GFF3 into Pandas dataframes
☆27Updated last year
Alternatives and similar repositories for gffpandas:
Users that are interested in gffpandas are comparing it to the libraries listed below
- Protein Alignment and Detection Interface☆61Updated last year
- ☆29Updated 4 months ago
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 3 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆48Updated 3 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆55Updated last year
- A versatile toolkit for k-mers with taxonomic information☆77Updated 9 months ago
- Python bindings for the TaxonKit library☆38Updated 3 weeks ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- gatk4 RNA variant calling pipeline☆47Updated this week
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- An R package designed for drawing gene arrow maps☆76Updated last week
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 10 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 2 years ago
- visual analysis of your VCF files☆32Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- ☆28Updated 4 years ago
- Merging paired-end reads and removing adapters☆44Updated last month
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- A set of tools to analyse the output from TraDIS analyses☆24Updated last year
- A program for detection of tRNA genes☆60Updated 2 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated last week