Assembly of Nanopore Sequencing
☆17Oct 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for Donut_Falls
Users that are interested in Donut_Falls are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UPHL's Reference Free Pipeline☆29Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆97Jul 23, 2026Updated 3 months ago
- Reference-based consensus creation☆61Oct 27, 2026Updated last week
- Pipeline for creating comprehensive viral reference sets.☆12Oct 28, 2026Updated last week
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Development moved to https://gitlab.com/cgps/tools/qualibact. QC cutoffs for bacterial genomes.☆19Updated this week
- Bacterial surveillance pipeline.☆30Sep 30, 2026Updated last month
- Python Toolkit for using containerized programs in either Singularity or Docker☆31Mar 19, 2024Updated 2 years ago
- ☆19Updated this week
- JUNIPER: Large-Scale Outbreak Reconstruction☆14Mar 26, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Oct 27, 2026Updated last week
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Oct 27, 2026Updated last week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 6, 2026Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated 3 months ago
- Predict MLST directly from uncorrected long reads☆28Oct 31, 2025Updated last year
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Oct 20, 2026Updated 2 weeks ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Dockerfiles and documentation on tools for public health bioinformatics☆226Oct 29, 2026Updated last week
- A curated database of completed assemblies with taxonomy IDs☆53Oct 27, 2026Updated last week
- k-mers and the like☆22Oct 18, 2026Updated 2 weeks ago
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆24Oct 27, 2026Updated last week
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 3 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆72Updated this week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Updated this week
- Population analysis PIPEline 🛠🧬☆28Mar 2, 2026Updated 8 months ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 6 months ago
- ☆28Aug 2, 2023Updated 3 years ago
- Lineage-aware Kraken2 refinement for long-read metagenomics☆17Oct 2, 2026Updated last month
- Use tbl2asn forever by pretending that it's still 2019☆12Jan 24, 2020Updated 6 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago