Assembly of Nanopore Sequencing
☆17Sep 1, 2026Updated this week
Alternatives and similar repositories for Donut_Falls
Users that are interested in Donut_Falls are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UPHL's Reference Free Pipeline☆29Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆95Jul 23, 2026Updated last month
- Reference-based consensus creation☆61Updated this week
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Aug 12, 2026Updated 3 weeks ago
- QC cutoffs for different genomes.☆18May 28, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python Toolkit for using containerized programs in either Singularity or Docker☆31Mar 19, 2024Updated 2 years ago
- ☆18Updated this week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Aug 11, 2026Updated 3 weeks ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated last month
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 10 months ago
- Viral (meta)-genome assembly pipeline.☆23Jul 22, 2026Updated last month
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated last month
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Updated this week
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆67Updated this week
- A Python package to update the MLST database for the mlst tool.☆32Jul 22, 2026Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Dockerfiles and documentation on tools for public health bioinformatics☆225Updated this week
- Scripts and reference files to type Group A Streptococcus☆11Aug 31, 2026Updated last week
- Population analysis PIPEline 🛠🧬☆26Mar 2, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bacterial surveillance pipeline.☆28Updated this week
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Opinionated viral metagenomics workflow☆17Updated this week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Aug 17, 2026Updated 2 weeks ago
- VIGOR4☆23Aug 15, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Aug 28, 2026Updated last week
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Updated this week
- A simple pipeline for bacterial assembly and quality control☆17Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 2 months ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago