Assembly of Nanopore Sequencing
☆17May 21, 2026Updated 2 months ago
Alternatives and similar repositories for Donut_Falls
Users that are interested in Donut_Falls are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- UPHL's Reference Free Pipeline☆29Jul 17, 2026Updated last week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆93Updated this week
- Reference-based consensus creation☆61Updated this week
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Jul 9, 2026Updated 2 weeks ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python Toolkit for using containerized programs in either Singularity or Docker☆31Mar 19, 2024Updated 2 years ago
- ☆18Updated this week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Jul 11, 2026Updated 2 weeks ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Updated this week
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 8 months ago
- Viral (meta)-genome assembly pipeline.☆23Updated this week
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 2 weeks ago
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated last month
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆63Updated this week
- A Python package to update the MLST database for the mlst tool.☆29Jul 22, 2026Updated last week
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Dockerfiles and documentation on tools for public health bioinformatics☆225Updated this week
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 3 months ago
- Population analysis PIPEline 🛠🧬☆25Mar 2, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Bacterial surveillance pipeline.☆28Jul 10, 2026Updated 2 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- Opinionated viral metagenomics workflow☆16Updated this week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Mar 25, 2026Updated 4 months ago
- VIGOR4☆22Aug 15, 2025Updated 11 months ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated last month
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆18Apr 22, 2026Updated 3 months ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 2 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 4 months ago
- A simple pipeline for bacterial assembly and quality control☆16Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago