Alternatives and similar repositories for jetson_nanopore_sequencing

Users that are interested in jetson_nanopore_sequencing are comparing it to the libraries listed below

• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆104Updated 4 years ago
• SorenKarst / longread_umi
  ☆81Updated 5 years ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆107Updated last year
• artic-network / fieldbioinformatics
  The ARTIC fieldbioinformatics pipeline
  ☆127Updated last week
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆154Updated 5 months ago
• connor-lab / ncov2019-artic-nf
  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…
  ☆91Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 7 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 5 years ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆80Updated 5 years ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆100Updated last year
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆116Updated this week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆83Updated 3 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆162Updated 3 years ago
• wdecoster / chopper
  ☆222Updated 2 weeks ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆126Updated last week
• marbl / parsnp
  Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…
  ☆148Updated 2 months ago
• ncbi / SKESA
  SKESA assembler
  ☆123Updated last year
• mjsull / Easyfig
  Development version of Easyfig
  ☆102Updated 2 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 3 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆153Updated 9 months ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆141Updated 2 weeks ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆152Updated 2 weeks ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆108Updated 11 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆177Updated 2 years ago
• aresti / primalscheme
  a tool for designing primer panels for multiplex PCR.
  ☆106Updated last year
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆40Updated 2 months ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆163Updated 3 months ago