sirselim / jetson_nanopore_sequencingLinks
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
☆109Updated last year
Alternatives and similar repositories for jetson_nanopore_sequencing
Users that are interested in jetson_nanopore_sequencing are comparing it to the libraries listed below
Sorting:
- Read Until client library for Nanopore Sequencing☆104Updated 11 months ago
- The ARTIC field bioinformatics pipeline☆125Updated last week
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated last month
- Long-read mock community experiments☆106Updated 3 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆173Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆82Updated 4 months ago
- ☆78Updated 4 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆125Updated last week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- ☆209Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆174Updated 2 weeks ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- Research release basecalling models and configurations☆115Updated 3 months ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆158Updated 2 months ago
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆120Updated last month
- Get assembly statistics from FASTA and FASTQ files☆122Updated 2 years ago
- Nanopore data assembler☆161Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- Development version of Easyfig☆100Updated last year
- Interactive quality assessment of genome assemblies☆107Updated 3 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆50Updated 9 months ago