Alternatives and similar repositories for toulligQC:

Users that are interested in toulligQC are comparing it to the libraries listed below

• epi2me-labs / wf-basecalling
  ☆37Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆124Updated 7 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆106Updated 2 weeks ago
• epi2me-labs / modbam2bed
  ☆47Updated 7 months ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆103Updated 2 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆89Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆107Updated 9 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆142Updated last week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated last month
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• twolinin / longphase
  ☆109Updated 3 weeks ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 2 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆91Updated 3 weeks ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆147Updated last month
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆59Updated 5 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 6 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆61Updated 3 weeks ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆95Updated last month
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆61Updated 2 weeks ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆112Updated last month
• SorenKarst / longread_umi
  ☆76Updated 4 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago