A post sequencing QC tool for Oxford Nanopore sequencers
☆111May 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for toulligQC
Users that are interested in toulligQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality control for MinION sequencing data☆218Mar 17, 2026Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆65Jan 22, 2026Updated 4 months ago
- ☆252May 4, 2026Updated 3 weeks ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36May 14, 2026Updated 2 weeks ago
- Graph-based assembly phasing☆95Nov 25, 2025Updated 6 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- quality filtering tool for long reads☆404Sep 17, 2025Updated 8 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Comparison of multiple long read datasets☆172Dec 2, 2025Updated 5 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated last year
- An overview of all nanopack tools☆292Jun 2, 2023Updated 2 years ago
- Quality control tools for nanopore sequencing data☆114Oct 26, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 3 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆185May 4, 2026Updated 3 weeks ago
- Plotting scripts for long read sequencing data☆550Mar 17, 2026Updated 2 months ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆27Feb 6, 2023Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 4 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 3 weeks ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 9 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆304Feb 3, 2026Updated 3 months ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆17May 22, 2026Updated last week
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13May 22, 2026Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- Technology agnostic long read analysis pipeline for transcriptomes☆159Jan 25, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Aug 27, 2018Updated 7 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20May 11, 2026Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago
- Minotour API, web and client code☆30Mar 28, 2026Updated 2 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 3 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆226Apr 30, 2026Updated 3 weeks ago