bonsai-team / Porechop_ABI
Adapter trimmer for Oxford Nanopore reads using ab initio method
☆39Updated 3 months ago
Alternatives and similar repositories for Porechop_ABI:
Users that are interested in Porechop_ABI are comparing it to the libraries listed below
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆45Updated last month
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆102Updated this week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- whole genome MLST analysis☆40Updated 9 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 3 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- ☆76Updated this week
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆55Updated this week
- Sorts amplicons from Nanopore sequencing data based on similarity☆34Updated 4 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 10 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- Synteny Imager☆60Updated 6 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Split Kmer Analysis☆62Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆58Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated last month
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last month
- ☆80Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago