bonsai-team / Porechop_ABI
Adapter trimmer for Oxford Nanopore reads using ab initio method
☆39Updated 2 months ago
Alternatives and similar repositories for Porechop_ABI:
Users that are interested in Porechop_ABI are comparing it to the libraries listed below
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last week
- Sorts amplicons from Nanopore sequencing data based on similarity☆34Updated 3 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆93Updated last week
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- whole genome MLST analysis☆40Updated 8 months ago
- ☆52Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆54Updated 5 months ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 weeks ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated last year
- Synteny Imager☆60Updated 5 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆58Updated 2 weeks ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- k-mer learning materials☆49Updated 9 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- ☆74Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆41Updated last month
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- ☆61Updated 3 weeks ago