☆13Dec 20, 2025Updated 6 months ago
Alternatives and similar repositories for spatialdata-workshops
Users that are interested in spatialdata-workshops are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆41Jan 6, 2021Updated 5 years ago
- Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks☆25Aug 23, 2025Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆61Aug 21, 2023Updated 2 years ago
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Mar 18, 2022Updated 4 years ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆17Mar 15, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- ☆17Mar 17, 2023Updated 3 years ago
- ☆17Oct 2, 2023Updated 2 years ago
- ☆36Jun 21, 2021Updated 5 years ago
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated last year
- ☆16Sep 13, 2024Updated last year
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 5 months ago
- Particle Swarm Optimization algorithm in Python☆14Apr 23, 2024Updated 2 years ago
- AD regulome analysis☆16Apr 4, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single-cell spatial omics analysis that makes you happy!☆69Jun 22, 2026Updated last week
- Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.☆16Dec 20, 2022Updated 3 years ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆38May 19, 2026Updated last month
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 10 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago
- ☆35Jun 23, 2026Updated last week
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆22Oct 19, 2022Updated 3 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- density growing clustering☆10Dec 2, 2021Updated 4 years ago
- Profile purification of single-cell spatial transcriptomics data☆50May 28, 2026Updated last month
- Personal diploid genome creation and coordinate conversion☆31Apr 1, 2025Updated last year
- Dose response curves and DIP rates for cell proliferation data in Python☆16Jun 22, 2026Updated last week
- Benchmarking and metadata tracking. CLI and Python integration. Extensible, with distributed/cluster support.☆20Jun 18, 2026Updated last week
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- ☆25Aug 20, 2024Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- ☆12Sep 20, 2019Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆26Oct 23, 2024Updated last year
- A Rmarkdown to SoS Notebook converter☆11Mar 26, 2026Updated 3 months ago
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated last year
- 충남대학교 김준 연구실 튜토리얼☆50Jan 7, 2025Updated last year
- ☆15Jun 1, 2019Updated 7 years ago